amiRNAs

Functional redundancy often hampers the analysis of gene families. To overcome this difficulty, we expressed artificial microRNAs (amiRNAs) designed to simultaneously target 2 to 6 paralogous genes encoding transcription factor family members in Arabidopsis (Jover-Gil et al., 2014). Of 338 tested transgenes, 21 caused a visible morphological phenotype in leaves, a proportion much higher than that expected from insertional mutagenesis. Therefore, this robust, versatile method enables functional examination of redundant paralogs and is particularly useful for genes arranged in tandem. Our amiRNAs have been deposited at the Arabidopsis Biological Resource Center.

amiR-TPL
amiRNA sequence (5´ to 3´)
Target genes
Protein products of the target genes
Score
T2 lines obtained
T2 lines confirmed
1UUAGAUAGCAUUUAGACGCGUAt1g28450AGL5827930
At1g28460AGL593
2UAUAAACGCAACUUAAACACCAt1g28450AGL5823423
At1g28460AGL592
3UAUGAUUAAAAUCCACGGGAGAt1g31630AGL861.54927
At1g31640AGL922.5
4UAGACUUAAAUCUUGAACGUCAt1g31630AGL8629328
At1g31640AGL922
5UUUUUGUGAAAGCAACUGUUUAt1g60880AGL561.51815
At1g60920AGL552
6UAUUGCGAUUUGAGUGACUGGAt1g60880AGL561.52316
At1g60920AGL552
7UAAAAAUCAUAAAGAGCCGGGAt1g65300AGL38; PHE21.52120
At1g65330AGL37; PHE11
8UAUAGAGUUACUAGCUCGUUAAt1g65300AGL38; PHE22.55324
At1g65330AGL37; PHE10.5
9UAUUUCCUUAGUUCGUCCUCUAt1g77950AGL67N.A.2524
At1g77980AGL661
10UUUAGUAGGAACAAGGCGUUGAt5g26580AGL3421616
At5g26650AGL362
11UACAAGGUGUUGAAACGGUACAt5g26580AGL3422826
At5g26650AGL362
12UAAUCCGAUAAAUAGGUCAGUAt5g51860AGL7221815
At5g51870AGL711.5
13UCCUUCUUAAAUAGACUGCUUAt5g51860AGL723.59428
At5g51870AGL711.5
14UGUUCAGACAGUUACAUCGUGAt1g20700WOX1433224
At1g20710WOX101
15UGAUUUGCUUACGAAGUGUCUAt1g20700WOX143.516026
At1g20710WOX101.5
16UCAAAAUUAUCAUUCGCGCAUAt4g18870heat shock transcription factor family protein22726
At4g18880AT-HSFA4A3
16*UCAAAAUUAUCAUUCGCGCAUAt4g18870heat shock transcription factor family protein250
At4g18880AT-HSFA4A3
17UCAAUGAAAUGUGAUCUCUAGAt1g26590zinc finger (C2H2 type) family protein3.519626
At1g26610zinc finger (C2H2 type) family protein1.5
18UCUGAUUUGAACAUGCUGAAGAt1g26590zinc finger (C2H2 type) family protein1.51615
At1g26610zinc finger (C2H2 type) family protein2
19UUGAUAAUUAUGGUAUGGGACAt3g07220transcriptional activator12919
At3g07260forkhead-associated domain-containing protein2
20UUACAACUCUCUAUUCCGGACAt3g07220transcriptional activator2.5
At3g07260forkhead-associated domain-containing protein1.5
20*UUACAACUCUCUAUUCCGGACAt3g07220transcriptional activator2.511
At3g07260forkhead-associated domain-containing protein1.5
21UAUCGGACAAGUAUGAGGCGUAt3g46080zinc finger (C2H2 type) family protein1.55427
At3g46070zinc finger (C2H2 type) family protein2
At3g46090ZAT71.5
22UAUUUUUUCAAAGUCGUCACUAt3g46080zinc finger (C2H2 type) family protein1.54129
At3g46070zinc finger (C2H2 type) family protein2
At3g46090ZAT72.5
23UAAGAGAAAUAUUAAUCGGGGAt1g34390ARF222.53222
At1g34410ARF212
At1g35240ARF20N.A.
At1g35520ARF152
At1g35540ARF142
At1g34310ARF122.5
24UCAUUGGUUAUCAAAAGCGUGAt1g34390ARF221.57727
At1g34410ARF211.5
At1g35240ARF202.5
At1g35520ARF151.5
At1g35540ARF141.5
At1g34310ARF121.5
24*UCAUUGGUUAUCAAAAGCGUGAt1g34390ARF221.5254
At1g34410ARF211.5
At1g35240ARF202.5
At1g35520ARF151.5
At1g35540ARF141.5
At1g34310ARF121.5
25UGAAAUGGUUCAGUUUCGCGUAt5g25470DNA binding protein1.52724
At5g25475DNA binding protein1
26UAAAUGCACUCUUACAGCGGAAt5g25470DNA binding proteinN.A.4025
At5g25475DNA binding protein1
26*UAAAUGCACUCUUACAGCGGAAt5g25470DNA binding proteinN.A.164
At5g25475DNA binding protein1
27UAAACCCACUUACCGUAGUUUAt4g25470DREB1C; CBF233216
At4g25480DREB1A; CBF31.5
At4g25490DREB1B; CBF12
27*UAAACCCACUUACCGUAGUUUAt4g25470DREB1C; CBF23153
At4g25480DREB1A; CBF31.5
At4g25490DREB1B; CBF12
28UGUAUAAAUAGCUUCUACCAUAt4g25470DREB1C; CBF21.577
At4g25480DREB1A; CBF33
At4g25490DREB1B; CBF10.5
28*UGUAUAAAUAGCUUCUACCAUAt4g25470DREB1C; CBF21.593
At4g25480DREB1A; CBF33
At4g25490DREB1B; CBF10.5
29UAGUAAAUGAAUAAUGCCGACAt3g26620LBD231.53825
At3g26660LBD241.5
30UAUAUGGUGAGAAUACGGAAUAt3g26620LBD2321815
At3g26660LBD242
31UUUAAAGGAACUUGUUGCCAUAt1g66370MYB11323226
At1g66380MYB1141.5
At1g66390MYB902
At1g56650MYB753
32UGCUUCAAAUAGUACAACCAUAt1g66370MYB1132.53225
At1g66380MYB1143
At1g66390MYB902
At1g56650MYB752
33UUUCAUCAUAGAAUGAUGGUGAt2g26950MYB1041.55321
At2g26960MYB813
34UAAGUUCUCAACCGCGUGAAUAt2g26950MYB1041.53524
At2g26960MYB813
35UAAAUCACAUGAUCGUGCUUGAt1g60280ANAC0231.52417
At1g60300apical meristem formation protein-related1.5
At1g60340apical meristem formation protein-related1.5
At1g60350ANAC0241.5
At1g60380apical meristem formation protein-related1.5
36UAUCAGUUUAUCACGACGCAUAt1g60280ANAC02323426
At1g60300apical meristem formation protein-related2
At1g60340apical meristem formation protein-related1
At1g60350ANAC0242.5
At1g60380apical meristem formation protein-related2.5
37UUACUUCUUAUCUAACGCGCUAt3g10480ANAC0501.54029
At3g10490ANAC0512.5
38UAACACAUAUGCAUCGUGCACAt3g10480ANAC0501.52926
At3g10490ANAC0511.5
39UAAACAAAUAUUCAACCGGCCAt4g01520ANAC0670.52721
At4g01540ANAC0681.5
At4g01550ANAC0691.5
40UAAGUGAUGUGAUACUCGUGAAt4g01520ANAC0670.51717
At4g01540ANAC0680.5
At4g01550ANAC0691
41UUAAUUCUGUCAACACGCGACAt5g36670PHD finger family protein1.53126
At5g36740PHD finger family protein1.5
42UAAACUAUCAGUUACACCCUCAt5g36670PHD finger family protein1.55028
At5g36740PHD finger family protein1.5
43UAAGAUACCAUGUUGUAGUCCAt1g27360SPL111.53628
At1g27370SPL101.5
44UCAAAUUCAUAGAAACCGGUGAt1g27360SPL113.51515
At1g27370SPL102
45UGAAUCCGCUAUGUAAACGUUAt5g50570squamosa promoter-binding protein02016
At5g50670squamosa promoter-binding protein0
46UAUUAAUAGUAACCACAGGCGAt5g50570squamosa promoter-binding protein1.51413
At5g50670squamosa promoter-binding protein1.5
47UAUAAGUUUUGCCUUCCGAUUAt1g76880trihelix DNA-binding protein22826
At1g76890GT23.5
48UCUUUGACUUUCUGGAAGUAUAt1g76880trihelix DNA-binding protein12118
At1g76890GT22
49UUUUUGCAUAGGUACACCGAAAt1g66550WRKY670.56824
At1g66560WRKY640.5
At1g66600WRKY632
50UUAAGUGGUUCUGUACACUAGAt1g66550WRKY6722321
At1g66560WRKY642.5
At1g66600WRKY633
51UAAGCUGUAAUGUUCACCGAUAt2g31210basic helix-loop-helix (bHLH) family protein2.53825
At2g31220basic helix-loop-helix (bHLH) family protein1.5
52UAACAUCUCAGUGAGUUGUAGAt2g31210basic helix-loop-helix (bHLH) family protein2.52320
At2g31220basic helix-loop-helix (bHLH) family protein2
53UAAAAGUUAUGAAUCUUGGCCAt3g56970basic helix-loop-helix (bHLH) family protein22421
At3g56980basic helix-loop-helix (bHLH) family protein2
53*UAAAAGUUAUGAAUCUUGGCCAt3g56970basic helix-loop-helix (bHLH) family protein252
At3g56980basic helix-loop-helix (bHLH) family protein2
54UCAAAGUGUAGAAAAGCCUAUAt3g56970basic helix-loop-helix (bHLH) family protein33128
At3g56980basic helix-loop-helix (bHLH) family protein2
55UAUGAUCCGAUAUUCACCUGGAt2g46670pseudo-response regulator, putative24929
At2g46790APRR92
56UAACUUUUCAUGUGAUACGGUAt2g46670pseudo-response regulator, putative1.56030
At2g46790APRR91
57UUAUCAGAAUGAAGGAACAAUAt5g15840CO12925
At5g15850COL12.5
58UAUGUUUCUUAAAACUCCACCAt4g21030Dof-type zinc finger domain-containing protein0.56527
At4g21040Dof-type zinc finger domain-containing protein2
At4g21050Dof-type zinc finger domain-containing protein1
At4g21080Dof-type zinc finger domain-containing protein1.5
59UAAACAGUCACUACACCCUACAt1g08000zinc finger (GATA type) family protein33227
At1g08010zinc finger (GATA type) family protein2
60UUAUUCUGGAACUAUGCGACCAt1g08000zinc finger (GATA type) family protein25428
At1g08010zinc finger (GATA type) family protein2
77UUUCUCUCAUCAAAUCGCCGUAt1g29560nucleic acid binding / zinc ion bindingN.A.4427
At1g29570zinc finger protein-related2
At1g29600zinc finger (CCCH-type) family proteinN.A.
78UAUCACCGUUCCCGGACGAAGAt5g50470NF-YC712525
At5g50490NF-YC53
79UUCUAUGCAAUAAAAACCAGCAt3g22760CXC domain containing TSO1-like protein 1/SOL11.52623
At3g22780putative DNA binding protein (tso1) mRNA, tso1-3 allele/TSO12.5
At4g14770TCX2N.A.
80UGAGUAAUGAAACAUCGCUUCAt1g07520scarecrow transcription factor family proteinN.A.2418
At1g07530GRAS2;SCL141.5
81UUAUACAUUUCUUCGAUCAUCAt1g75410BLH312625
At1g75430BLH112
At1g19700BLH100
82UCAAAGUGCAAAGAUUGGCAUAt5g66610DAR72.52320
At5g66620DAR61.5
At5g66630DAR52
At5g66640DAR3N.A.
At5g17890DAR41
83UUAGAUAGAAAGAUGUAGCCUAt4g00238DNA-binding storekeeper protein-related22621
At4g00250DNA-binding storekeeper protein-related3.5
84UGAAAACGAAGAAAACACUGGAt1g20693HMGB2; NFD211715
At1g20696HMGB3; NFD32
85UUCAUAUUGAUAAACUGCCAUAt2g30420ETC22.53129
At2g30432TCL12
86UAUUUCCACAUUGGCGCGGGGAt5g65050AGL31; MAF21.52416
At5g65060AGL70; MAF30.5
87UAUUGAGAGUUGACGACCUUUAt5g65070AGL69; MAF423521
At5g65080AGL68; MAF52
88UUCGAUGAAAAGCCGACGCAGAt1g55650high mobility group (HMG1/2)2.53324
At3g13350high mobility group (HMG1/2) 1.5
89UAACCUUCUUAAACGCGCGUUAt1g14685ATBPC2; BBR/BPC225121
At2g01930ATBPC1; BPC1/BBR2
90UAAGUCGCUAAAAACCACUUCAt1g14510AL723929
At2g02470AL63
91UCUAUCUACAAAUAGUGCGUUAt1g19350BES1; BZR20.53827
At1g75080BZR13
92UACCUUGCAUAGCGCGUGAUGAt1g20910ARID/BRIGHT DNA-binding domain-containing protein3.53025
At1g76510ARID/BRIGHT DNA-binding domain-containing protein3.5
At2g17410ARID/BRIGHT DNA-binding domain-containing protein1.5
93UAAGUAUGAAGAAGUACGCUUAt4g11080HMG1/2 family protein21816
At4g23800HMG1/2 family protein2.5
94UAUUGCGAUUAAGACGCGCUCAt3g11200AL21.57526
At5g05610AL12.5
95UAUUUAUGUUGCUCAUACGGGAt5g08190NF-YB1212018
At5g23090NF-YB131.5
96UUAUCACGGAAAUUCAGCGAUAt3g16940calmodulin-binding protein0.55026
At4g16150calmodulin binding / transcription regulator1
97UAAUGUAGCACAUGUAUGCUUAt5g09410CAMTA1; EICBP.B11815
At5g64220calmodulin-binding protein2.5
98UACCAUUGAAAUGUGUCGUUUAt1g54160NF-YA512619
At3g14020NF-YA62
99UGAUUAGUUUGUUUUGCGCGUAt1g17590NF-YA812119
At1g72830NF-YA3; ATHAP2C2
100UAUGGAUCCUGAUAUGGGUUAAt3g20910NF-YA91.52921
At5g12840NF-YA1; ATHAP2A0
101UAAAUGCCGAGAUUUAUGCAUAt1g30500NF-YA713022
At2g34720NF-YA40.5
102UGUUACCCAUAACUAUUCCCGAt1g08970NF-YC9; HAP5C12222
At1g54830NF-YC30.5
103UAAUGAUGCAUAUAUGGCCUGAt3g05690NF-YA2; HAP2B11715
At5g06510NF-YA103
104UGAAAUCAAAGAUGACCGUUUAt5g27910NF-YC81.52722
At5g50490NF-YC51
105UAGUUAGCUUAGCUUUACCGGAt4g00232unknown protein0.52721
At5g41765unknown protein2.5
106UAUCGUUUUUCUGAUGCGUACAt3g48590NF-YC1; ATHAP5A12119
At5g63470NF-YC41
107UUUCAUAAAACGGCGCCCUAUAt3g04930transcription regulator1.52020
At5g28040transcription regulator1
108UCAAUCGUCAAAGAAACGCCUAt2g36400ATGRF322119
At3g52910ATGRF41
109UAACUCUUUUCGGAAAUCCUGAt2g17560HMGB4; NFD414024
At3g56140unknown protein3
110UUACUUAACUAUCUGUCCGUCAt1g32330ATHSFA1D; HSFA1D2197
At4g17750ATHSF1; HSFA1A0.5
111UAUAAAACCAGUCAUAUCACCAt1g55950unknown12524
At2g01370DNA-binding storekeeper protein-related1
112UUUUUCGAUAGGAUACACGAUAt2g39900LIM domain-containing protein12219
At3g55770LIM domain-containing protein2
113UAGACCUAGUAAAUUUCGGAGAt2g25650DNA-binding storekeeper protein-related05724
At4g00270DNA-binding storekeeper protein-related1
114UAUACUUAUAGAUCGACGCCUAt2g22840ATGRF10.53327
At4g37740ATGRF22
115UAUGUCAGGUAAGAUCACUUCAt4g26170unknown protein14826
At5g56780ATET2; ET20.5
116UAAACCAUAUGUAUUAGGCUGAt4g18880AT-HSFA4A; HSF A4A1.51716
At5g45710HSFA4C; RHA10.5
117UUAAAACGCAUUAGUACCUGCAt1g61730DNA-binding storekeeper protein-related1.54829
At4g00390transcription regulator1
118UAGAGGACAAGGGCCCGCGUUAt5g67000member of ERF B-61.52217
At5g67010member of ERF B-61.5
At2g20350member of ERF B-61
119UAAGCCAUAUCGUAGACCUCGAt4g25400bHLH family protein2.51918
At5g51780bHLH family protein1
120UAUGAAACUUACUGCUCCGUUAt4g25410DNA binding / transcription factor24828
At5g51790bHLH family protein0
121UUAAUGAAUUGCGACGGGACGAt2g12900DNA binding / transcription factor1.53527
At2g12940UNE41
At2g13150transcription factor2.5
122UGUAUAGUCACAAAUCCCGUUAt2g40340member of the DREB subfamily A-2 of ERF/AP2 transcription factor1.51515
At2g40350member of the DREB subfamily A-2 of ERF/AP2 transcription factor0.5
123UACUUGUAUUGCUUGAUGUGAAt5g20510AL524229
At5g26210AL40.5
At3g42790AL32
124UAUCAAAACUAUCUCAUGCCCAt4g31640transcriptional factor B3 family protein0.51916
At4g31650transcriptional factor B3 family protein0.5
At4g31680transcriptional factor B3 family protein3
At4g31690transcriptional factor B3 family protein0.5
125UCUGUAUUGAUUAACGCCAUUAt1g64530RWP-RK domain-containing protein12724
At4g24020NLP72
126UUAAUACCCAAUUCGCCGCAUAt1g74480RWP-RK domain-containing protein33823
At1g18790RWP-RK domain-containing protein1
127UUUUCCCUUUGUAUAUCGACUAt1g14410WHY1; PTAC113227
At2g02740WHY3; PTAC112
128UGUAUAGAAUGAAUCGAGUGGAt2g17150RWP-RK domain-containing protein13823
At4g35270RWP-RK domain-containing protein1.5
129UUUCUGAAGAAAACUAUGGAGAt1g30135JAZ8; TIFY5A13520
At2g34600JAZ7; TIFY5B1.5
130UUCUCUAAGAACCUAGCCAAGAt3g17860JAZ3; TIFY6B1.55130
At1g48500JAZ4; TIFY6A1
At1g70700JAZ9; TIFY71.5
131UACAUAACGUUUGAUGUGCAUAt2g43500RWP-RK domain-containing protein14127
At3g59580RWP-RK domain-containing protein1
132UGAUUACGUUUGAUAAGGCAUAt5g18680ATTLP110.55628
At3g06380ATTLP91.5
133UGUCAAAACUCGCUUACCGUCAt1g20640RWP-RK domain-containing protein0.53628
At1g76350RWP-RK domain-containing protein1
134UAAUAUAUGUCUGAACGCAAGAt1g76590zinc-binding family protein22119
At1g21000zinc-binding family protein0.5
135UACAUUCACUCUUAUGUGAAGAt1g32700zinc-binding family protein04925
At4g17900zinc-binding family proteinN.A.
136UCAUAUAUGAACAAGUGCCUCAt5g67480BT412215
At4g37610BT51.5
137UACAAAAGUAAUGACGAGUGAAt1g79000HAC1; PCAT202221
At1g16710HAC121
138UAUGAAAGUUUGAUCUAGUUCAt2g38250DNA-binding protein-related0.53021
At5g01380transcription factor1
139UUGUUAUCUUGUCUUAUGGGUAt2g20825ULT212019
At4g28190ULT12
140UAAAGAUGUUUAGAGCUCACGAt1g21200transcription factor21212
At1g76870unknown1
141UUCUUGACUUGCAAUUACCAUAt1g14440ATHB3113428
At2g02540ATHB21; ZFHD41.5
142UGAAUAUGGUCAACUGCGAAUAt1g17380JAZ5; TIFY11A1.57225
At1g72450JAZ6; TIFY11B1
143UUUUUGUGAAUAUGCAGGGUUAt4g14713PPD1; TIFY4A2.55128
At4g14720PPD2; TIFY4B1
144UUAAUAUCGAUGUCCUGUCGAAt5g10570bHLH family protein33922
At5g65640bHLH0931
145UAUCUUGCGGGUAUAUGACAGAt1g22490bHLH family protein0.52319
At1g72210bHLH family protein2.5
146UUACCUGCUUAUACGUCCCUCAt1g28050zinc finger (B-box type) family protein24424
At2g33500zinc finger (B-box type) family proteinN.A.
147UAAUUCUGAUUAGCCACGCAUAt4g35040bZIP transcription factor family protein2.53328
At2g16770DNA binding / transcription factor1
148UAGUCUGUACUUUUCUCGCGAAt1g06070bZIP691
At2g31370POSF211.5
149UUUUCGUGGCUUAAGGACCUCAt4g28140member of the DREB subfamily A-6 of ERF/AP2 transcription factor family2.53625
At2g20880AP2 domain-containing transcription factor2
150UAGUACGGUGCCAAAACACAUAt1g07900LBD114827
At2g28500LBD110
151UAUGUACACCCAUGAAUCCUGAt3g07340bHLH family protein13128
At5g48560bHLH family protein1
152UACAAUUAGCUAAGCAGUCGAAt1g11950transcription factor13626
At1g62310transcription factor jumonji (jmjC) 1
153UUCAAACUCGGGACUUGUCUGAt1g01520myb family transcription factor1.51716
At4g01280myb family transcription factor2.5
154UUAGUGUUAGGUGAGUGACAGAt1g51700ADOF112924
At3g21270ADOF22
155UGAAAAUCAUGCCGCAAACGAAt1g29160Dof-type zinc finger domain-containing protein23028
At2g34140Dof-type zinc finger domain-containing protein2
156UCAUGAGUAACACAGUGUCUUAt3g06740GATA152.52017
At5g49300GATA161.5
157UACAUAGUGUUUUACGUCCAAAt2g45050GATA213328
At3g60530GATA42.5
158UCACUCGAAAAUGUUGCGCUUAt3g51080GATA612625
At5g66320GATA52.5
159UACUCGAUCUAUUACUAGCAUAt4g17570GATA2602421
At5g47140GATA272
160UCUUAGAAUCUCGUUAUGCGAAt1g55110ATIDD702820
At3g13810ATIDD11; MCP4.21
161UCACAUUCAGUACAUGGACGUAt2g17180zinc finger (C2H2 type) family protein16625
At4g35280zinc finger (C2H2 type) family protein0
162UAGUAACGCAUGAAUUCACGAAt2g24500FZF2.51717
At4g31420zinc finger (C2H2 type) family protein0
163UAAGUCUCACACUUGAAUCUAAt2g45120zinc finger (C2H2 type) family protein0.52520
At3g60580zinc finger (C2H2 type) family protein3
164UAUUCACACAUAGGAUGUCCGAt2g47090nucleic acid binding / protein binding / zinc ion binding22320
At3g62240zinc finger (C2H2 type) family protein1
165UUUAAUCGCAUUGCGUCGCUUAt3g27970exonuclease/ nucleic acid binding / zinc ion binding2.54124
At5g40310exonuclease family protein1
166UGAGUUAUCUAAAUGUACCGGAt3g50700ATIDD212519
At5g66730zinc finger (C2H2 type) family protein2.5
167UACAAAUGCGCUUCGUACCUUAt1g16060ADAP12422
At1g79700ovule development protein, putative1.5
168UUCUAAACAUAAAGGGACCUCAt1g25550myb family transcription factor14423
At1g68670myb family transcription factor1.5
169UAUUGGUGAAUCCGGACGCAAAt2g19810zinc finger (CCCH-type) family protein26528
At4g29190zinc finger (CCCH-type) family protein1
170UAUUAUGAUGUGAUCCAGCGUAt2g41130bHLH family protein0.52219
At3g56770bHLH family protein0.5
171UAUGUGUGGUAUGUACGUCUAAt1g64000WRKY560.51717
At5g41570WRKY241.5
172UUUGACGUAACGAUUGCCCGAAt5g05550transcription factor11614
At3g11100transcription factor2.5
173UUUGAUCCUAUUUUGUACCUAAt1g33280BRN11.52119
At4g10350BRN23
174UUAUUGGACUAAGUGGUGCUAAt5g10120ethylene insensitive 3 family protein21816
At5g65100ethylene insensitive 3 family protein1
175UAUGUAAUAUGGACCUGGCUGAt1g04990zinc finger (CCCH-type) family protein31917
At2g32930ZFN21.5
176UGUAUAAUCCGACAGACGCGAAt5g54630zinc finger protein-related12017
At4g27240zinc finger (C2H2 type) family protein1
177UUUGAAUCGGAUUACACGCGCAt2g18380GATA201.52018
At4g36620GATA191.5
178UAUGAUGGCUUGAAAACGCGUAt1g04500zinc finger CONSTANS-related34227
At2g33350unknown2
179UUUAAAUUUGUUGGCGGGCCUAt1g32150BZIP682.53022
At2g35530BZIP161
180UAAAUGCUACGCCAAUCGCAUAt5g08520myb family transcription factor1.52823
At5g23650myb family transcription factor2
181UAAUUUACGUACCUCGGACCGAt1g25440zinc finger (B-box type) family protein13128
At1g68520zinc finger (B-box type) family protein1.5
182UAAUUGGUUAACCAGACGCGGAt2g22850ATBZIP61.52218
At4g37730ATBZIP72
183UUAUAUGCUUUAAUGCGUCGCAt4g37850bHLH family protein1.51616
At2g22750bHLH family protein2.5
184UGAUAUACGAAAUAGCGUCGCAt4g17880bHLH family 1.52119
At5g46760bHLH family 2
185UAAACGGCCGUUAUCACGCUUAt2g24260LRL108427
At4g30980LRL23
186UGUAUUGACAUGUUUUUCCGAAt2g41835zinc finger (C2H2 type, AN1-like) family protein1.54620
At3g57480zinc finger (C2H2 type, AN1-like) family protein2
187UAUAUUAUAGCUCAUCCACGCAt1g53910RAP2.121.51816
At3g14230RAP2.23
188UUACAUAAUCGACAAUGUCGUAt1g03040bHLH family protein15227
At4g02590UNE121.5
189UGUUUUCCGGCAUGGAUACUAAt1g63820unknown1.52824
At5g41380unknown1
190UCAAUCUUGGUAAUCAGGCGUAt3g21880zinc finger (B-box type) family protein31817
At4g15250zinc finger (B-box type) family protein1.5
191UAAAGUACACCUCAAGGGCAGAt2g45880BAM7; BMY416724
At4g00490BAM2; BMY91.5
192UUACAGCAUUGUAACCCCCGGAt3g12130KH domain-containing protein / zinc finger (CCCH type) family protein25527
At5g06770KH domain-containing protein / zinc finger (CCCH type) family proteinN.A.
193UGACUGAUUUUAUCUGGUCAUAt2g35430zinc finger (CCCH-type) family protein14924
At1g32360zinc finger (CCCH-type) family proteinN.A.
194UUUAUCACAGCCUGCGACCGGAt2g42300bHLH family protein1.52318
At3g57800bHLH family protein1.5
195UAACCGAAUUUACACUGGCAGAt3g06410nucleic acid binding / zinc ion binding22816
At5g18550nucleic acid binding / zinc ion binding1.5
196UGAGAUCGUACGUAAGGUCAUAt1g14600DNA binding / transcription factor22322
At2g02060transcription factor2.5
197UUAAGAGCGUUCAACAAGCGUAt1g13300HRS12.52323
At3g25790myb family transcription factor1
198UUACUAGGCAUAACCCAGCGAAt3g24120myb family transcription factor2.52219
At4g13640UNE162
199UAAUCGAUAAUGUGUAUCCGUAt2g45160HAM122119
At3g60630HAM22.5
200UACAGUUAACGACGAGCGCUUAt3g49950scarecrow transcription factor family protein12416
At5g67411unknownN.A.
201UACUGCGUAAUUACUCAGCUUAt3g50650SCL72.52120
At5g66770scarecrow transcription factor family protein0
202UUGAUGUGUAAGGCUUACCUGAt1g19700BLH10; BEL1013024
At1g75410BLH32.5
203UAUUAGCGAUAUGAGCAACUAAt4g17710HDG40.51918
At5g46880HDG5/HB72
204UUCAACGUCGAACCAUGUCGGAt1g18710MYB472.51616
At1g74430MYB951.5
205UCAAAUGAGUGUGCGAAACUUAt1g06180MYB13N.A.2622
At2g31180MYB142
206UUUGAACCAGCGAUCCGGCGUAt3g11280Putative transcription factors interacting with the gene product of VHA-B1 1.51915
At5g05790myb family transcription factor1
207UUACGUGCAAUUGUCGACCAUAt3g24310MYB305; ATMYB7123521
At4g13480ATMYB791.5
208UUAAAACGUUUAGAUGGCCGGAt3g02940MYB1072.52017
At5g16770ATMYB91
209UUAUUGGAACAAUUGGACCUUAt5g10280MYB9225129
At5g65230ATMYB531
210UCGUUCCAAUUAUGGGGGCCAAt1g17950MYB521
At1g73410MYB543
211UAACUGCCAAAUGUCAUGCACAt1g25340MYB11622220
At1g68320MYB621
212UGAUGUAGGUAAUUAACGCAUAt3g46130MYB48/MYB11111411
At5g59780MYB592
213UAAGAUUUACCAGAGCGCCCUAt2g39880MYB2512417
At3g55730MYB1092
214UAAUUUCCACGCUUAAUCCCGAt3g47600MYB941.52623
At5g62470MYB961
215UGUAACUGAGCAGGCAUGCGGAt4g26930MYB971.52826
At5g55020MYB1201.5
216UAAGUUACGCCACUUAUCCUUAt1g17520DNA-binding protein, putative1.51717
At1g72740DNA-binding family protein / histone H1/H5 family protein0
217UGUCAACGACGGAUCGCGCUUAt2g22800HAT922322
At4g37790HAT221.5
218UUAAUGCCUUAACGUGCUCUUAt3g01220ATHB201.51817
At5g15150HAT7; ATHB32
219UAUCGUACUGUUUGGCGACGCAt4g17460HAT122321
At5g47370HAT22
220UGAUUGUUCAAACUGACGCACAt1g19000myb family transcription factor1.53829
At1g74840myb family transcription factor1
221UACUACGUUUCCGACAGGCUAAt2g42150DNA-binding bromodomain-containing protein0.51514
At3g57980DNA-binding bromodomain-containing protein0.5
222UAAUUGAAGCGAUAGUACCGAAt2g44430DNA-binding bromodomain-containing protein12017
At3g60110DNA-binding2
223UACUUAUCGGGUAAGUCCCUAAt3g44290ANAC06022523
At5g22290ANAC0891.5
224UAACUAGACUCCCGUCCCCUGAt1g17460TRFL312717
At1g72650TRFL63
225UUAAUGGUUGACUGACAUCUAAt3g11580DNA-binding protein, putative11717
At5g06250transcription factor MHF153
226UAGUACCACUUAAGAUCGCCUAt5g09330ANAC082; VNI1N.A.2424
At5g64060ANAC1032
227UUGACUCAGUCCGAGUGCCGGAt1g52890ANAC01922321
At3g15500ANAC055; ATNAC31
228UAGUCUUGUGCCAGCGAACGGAt3g01600ANAC04433024
At5g14490ANAC0851
229UAUAUGCGUCCUGCGUGCCGAAt3g03200ANAC04511616
At5g17260ANAC0861
230UCAUAGUCGAUAUUGAUGCAUAt4g17980ANAC0712.52422
At5g46590ANAC0961
231UUAGUCAUAAACGACACUCGUAt4g18170WRKY2812621
At5g46350WRKY82
232UAAAAUGCCGAUUCUGGUCUGAt2g44150ASHH3; SDG711918
At3g59960ASHH4; SDG242
233UAAUAGGUGUGUUAUGCGCCAAt3g02890PHD finger protein-related1.51714
At5g16680PHD finger family protein2
234UAUGCUAAAAUCAUGGGACGUAt2g37520PHD finger family protein12019
At3g53680PHD finger transcription factor2
235UGUAUAUAGCAAUUAGCGCAAAt1g55970HAC4; HAC6; HAG4; ATHPCAT21.5136
At3g12980HAC5; ATHPCAT41
236UAAACGUCUGAUGACCGCCUAAt3g01030nucleic acid binding / transcription factor/ zinc ion binding31918
At5g15480zinc finger (C2H2 type) family protein1
237UACUCGUACUUUGCGUGACAAAt3g02790zinc finger (C2H2 type) family proteinN.A.2624
At5g16470zinc finger (C2H2 type) family protein1
238UAUUUGAACUUACAGUCCCCAAt5g63260zinc finger (CCCH-type) family protein02019
At3g48440zinc finger (CCCH-type) family protein1
239UAAAUAUGCCCCCGCGACCUAAt4g25440ZFWD111817
At5g51980ZFWD21
240UUAUCGUAAGAGCUCAACCUAAt1g74930ORA47N.A.2422
At1g19210member of the DREB subfamily A-5 of ERF/AP2 transcription factor family1.5
241UUUUAAUAGCUAAAGUCGCAAAt3g60490member of the DREB subfamily A-4 of ERF/AP2 transcription factor family1.53428
At2g44940member of the DREB subfamily A-4 of ERF/AP2 transcription factor family2.5
242UGAAUUUAGCGACGAACACGGAt4g37540LBD3912016
At3g49940LBD381.5
At5g67420LBD37; ASL391
243UUAGUUCCGCAAUCAACCCAAAt3g16870GATA1712117
At4g16141sequence-specific DNA binding / transcription factor/ zinc ion binding3
244UAUGGCACUUUAUGUCGUCUGAt1g25250ATIDD160.51615
At1g68130ATIDD142
245UUAACCCUAGAUGAACAUCUAAt1g51220WIP51.52826
At3g20880WIP41.5
246UACGAAACGUUUGUGUGGCAGAt3g10760myb family transcription factor2.52216
At5g05090myb family transcription factor1.5
At2g40970MYBC11.5
247UUUAGACGGAGUUUGUUUCGCAt1g70920ATHB182.51413
At2g01430ATHB171
248UUAAGCUUACCAUUGAACCAGAt1g50620PHD finger family protein22017
At3g20280PHD finger family protein2
249UUAUGAUAGAAGGCUUAGCUCAt5g08330TCP family transcription factor, putative11918
At5g23280TCP family transcription factor, putative2.5
250UCAAUUCGGGUGCGUGCGCUUAt5g56270WRKY22.599
At4g26440WRKY34; MSP30.5
251UAAUGGUACGCCAUUUUGCAGAt3g49850TRB3; TBP212419
At5g67580TRB2; TBP3N.A.
252UAUUUGGCGTGAAAGACACAUAt1g04050SUVR11.51917
At5g43990SUVR23
253UUGAACUGACCUUUAUCGCGUAt1g51600GATA28; TIFY2A; ZML212423
At3g21175GATA24; TIGY2B; ZML13
254UGACGUCUGUCAAACGCUCGCAt5g22380ANAC090N.A.2018
At3g44350ANAC0612
255UGACUUGCUACCAUUCAGCAUAt3g04060ANAC0461.52722
At5g18270ANAC0871
256UUAGUGACACUCGAAUCGCAUAt2g41940ZFP821816
At3g58070GIS2
257UAAAAUCCCGAGUUUGCGCUAAt1g03840MGP22015
At5g44160NUCN.A.
258UAGGACACUUUAGGGCGCCCGAt1g07640OBP222117
At2g28810Dof-type zinc finger domain-containing protein2
259UAUUUCACUGUUAUGAGCCUAAt1g13450DNA binding protein GT-114828
At3g25990DNA-binding protein GT-1-related2.5
260UUACUCACAAACAACUUGCGUAt1g18835MIF3N.A.2017
At1g74660MIF12.5
261UCCUAUAUUCAAUAAGGCCAGAt1g19270DA10.53021
At4g36860AP22_331
262UAUUCAAUUGUAUUGUGGCUGAt1g26960ATHB2312219
At1g69780ATHB133
263UAAAUCAACGACCGAUGACGGAt1g53170ATERF8; ERF81.53025
At3g15210ATERF4; ERF4; K7L4.1; RAP2.50.5
264UAUUUACGGUCUUUCUGGCUGAt1g56010ANAC021; ANAC02232625
At3g12977DNA bindingN.A.
265UAUAUCGCAUCCCUUAACCAAAt2g16400BLH715527
At4g34610BLH63
266UUUUGCACGUGACGUGUCCCGAt2g24790ATCOL3; COL322524
At5g24930ATCOL4; COL41
267UUACUUUGGAUCGCUACGCGCAt2g25180ARR121.52719
At4g31920ARR101
268UAGUAUAAAGCAUUGGUGCUGAt2g24500FZF32523
At4g31420zinc finger (C2H2 type) family protein2
269UAUCCCAAAAAUAAUCCCCGGAt2g46310CRF512217
At3g61630CRF62.5
270UUAGAGGAUAGCUUAACACAUAt3g02830ZFN11.53022
At5g16540ZFN31
271UGAUAUCUAACAAUUUGGCUGAt3g02990ATHSFA1E; HSFA1E2.52422
At5g16820ATHSF3; ATHSFA1B; HSF3; HSFA1B1.5
272UUAUAAACACCGUUAUACCCCAt3g03660WOX11N.A.2523
At5g17810WOX122.5
273UAUCAGAUCGACAAUACGCCAAt3g07650COL931916
At5g48250zinc finger (B-box type) family protein0.5
274UUGUGGAUGUUCAUACGCCAUAt3g09290TAC122519
At3g53820zinc finger (C2H2 type) family protein3
275UUUACCGUAGAAACUUAGCUAAt3g11260WOX533127
At5g05770WOX71
276UAUUUUCGGUCUCUCACGCAUAt3g29035ANAC059; ATNAC312017
At5g39610ATNAC2; ORE1; ANAC092; ATNAC61
277UAUGAUAUCCUUGCAUACCCGAt3g46640PCL1; LUX0.51918
At5g59570myb family transcription factor1
278UGUUACAAAUGAUGUUCUCGUAt3g49690ATMYB84; RAX32.53026
At5g65790ATMYB68; 2
279UGUAACUCCUCACUUUAGCUUAt3g50060MYB770.52016
At5g67300ATMYB44 ATMYBR12
280UGAAUGUCACGGACAGUACAUAt3g50410OBP1N.A.2220
At5g66940Dof-type zinc finger domain-containing protein2
281UUAGUACCAUCGACAACGCACAt4g04260bromo-adjacent homology (BAH) domain-containing protein11817
At4g22140EBS2.5
282UAGAACACCGUAAUGUUUCUUAt2g22430ATHB61.53225
At4g40060ATHB162.5
283UCACUUAAAGACCAGCGCCAUAt5g02810APRR7; PRR713026
At5g60100APRR3; PRR31.5
284UACAUUAGCGAGACGAUACUUAt5g08790ANAC081; ATAF20.5129
At5g63790ANAC1020.5
285UUACUUUAGAUACUAGUUCCCAt3g04030myb family transcription factor12016
At5g18240MYR12.5
286UUUAGGUAGUUAGUGCGUCUGAt3g01140ATMYB1061.51413
At5g15310ATMYB162
287UUUUAUAGUGUCAGCUACCGAAt1g53230TCP312421
At3g15030MEE35; TCP41
288UCUUACAAGACUAUUUCGCUAAt5g50570squamosa promoter-binding protein1.52622
At5g50670squamosa promoter-binding protein1.5
289UUCUGAAUUCACGCUUCGCAUAt2g46670pseudo-response regulator, putative / timing of CAB expression 1-like protein1.52320
At2g46790APRR9; PRR9; TL11.5
290UUUAUUUCCACAUUGGCGCGGAt5g65050AGL31; MAF21.52928
At5g65060AGL70; MAF3; FCL30
291UUCUAAUUACAGACAGCGCAUAt5g65070AGL69; MAF4; FCL433027
At5g65080AGL68; MAF51.5
292UAACUGACUUGUCAGAUGCCCAt1g20693HMGB2; NFD02N.A.2018
At1g20696HMGB3; NFD032
293UGUAUCAGAAUGAACGAACUAAt5g15840CO; FG21814
At5g15850ATCOL1N.A.
294UGAAAACAGUCACUAAGCCAUAt1g08000GATA1026329
At1g08010GATA111.5
295UAUUUCAUAGACCUACGACCAAt1g27360SPL1112920
At1g27370SPL102
296UAAUAUUCAACCGGCUCUCGGAt4g01520ANAC0670.54328
At4g01540ANAC068; NTM12
At4g01550ANAC0691
297UGAAAUGCACUCUUAUAGCGUAt5g25470DNA bindingN.A.2120
At5g25475DNA binding1
298UUAAUAGCUCACGACUGCCUCAt3g10480ANAC05022220
At3g10490ANAC0512
299UUUAUCGCAUGCAAAUGUCGCAt1g30500NF-YA712725
At2g34720NF-YA42
300UUUCGAGAAUGAAUAGGUCACAt3g48590ATHAP5A; NF-YC12.52825
At5g63470NF-YC42
301UUUUGUAAAUCGAAUGGCCCAAt1g14410AtWHY1; PTAC11.53126
At2g02740ATWHY3; PTAC110.5
302UCAUAUGUAUUAAGGUGGCGGAt4g18880HSF A4A22525
At5g45710HSFA4C; RHA11.5
303UUCAAAACUCGCUUACGACCUAt1g20640RWP-RK domain-containing protein22018
At1g76350RWP-RK domain-containing protein1
304UAAGUAUUGUCGAAGAGCCUCAt2g17150RWP-RK domain-containing protein0.52016
At4g35270RWP-RK domain-containing protein1.5
305UUUGAAACGUACAGUGUGCUCAt2g43500RWP-RK domain-containing protein24726
At3g59580RWP-RK domain-containing protein1
306UGUCUACGGUAUUUAUCCCGAAt5g09410CAMTA1; EICBP.B22822
At5g64220calmodulin-binding protein3
307UACCUUGCAUAGCACGCGCUUAt1g20910ARID/BRIGHT DNA-binding domain-containing protein22823
At1g76510ARID/BRIGHT DNA-binding domain-containing protein2
At2g17410ARID/BRIGHT DNA-binding domain-containing protein3
308UAUUGCGAUUAAGACGCGCUCAt3g11200AL211918
At5g05610AL12
309UGUUUUGCGAAUAUGUAGCGUAt4g14713PPD1; TIFY4A1.52118
At4g14720PPD2; TIFY4B1.5
310UAGUAAUGUCGUUAUUGCCGGAt1g14440ATHB3122018
At2g02540ATHB21; ZFHD41
311UUCUUAAACGCGCCUUGACUAAt1g14685BBR/BPC202418
At2g01930BBR/BPC10
312UGAAAGCUUAUCCUAUCACCAAt1g19350BZR2; BES122920
At1g75080BZR12
313UUUUAUGUUGCUCACACGCGGAt5g08190NF-YB1212623
At5g23090NF-YB132
314UUAAGAGCGUGAAAAUGUCGCAt1g17590NF-YA812319
At1g72830HAP2C; NF-YA31.5
315UUUACCCAUAACCAUUCGCGAAt1g08970HAP5C; NF-YC921716
At1g54830NF-YC32
316UUAUAUGGCUUACGGCAGCUAAt3g05690HAP2B; NF-YA2; UNE822217
At5g06510NF-YA101
317UAUGUAAUAUGGACCUGGCUGAt1g04990zinc finger (CCCH-type) family protein32016
At2g32930ZFN21.5
318UUAGAUAACGGCUGACGUCAAAt1g16060ADAP2.51716
At1g79700ovule development protein, putative1
319UAGCUGCUCAAAAUGACGCAUAt2g39900LIM domain-containing protein22320
At3g55770LIM domain-containing protein2
320UAGGACGUUGCCUAAUCGCGCAt1g53910RAP2.1222423
At3g14230RAP2.22.5
321UUGAGAUCUACAGACGUACUAAt1g17460TRFL3N.A.2120
At1g72650TRFL62
322UACAGUAAGAGCAAAACGCCUAt1g76590zinc-binding family protein12120
At1g21000zinc-binding family protein2
323UACUUUAGCACUAUGGAUCAAAt1g32700zinc-binding family proteinN.A.2323
At4g17900zinc-binding family protein2
324UAACACGCAACCUAGUGUCGGAt1g28050zinc finger (B-box type) family protein23428
At2g33500zinc finger (B-box type) family protein2
325UUUAUGGUUCGAUUGCUGCUAAt1g14920GAI; RGA223623
At2g01570RGA; RGA13
326UGACUCGAAAACAACGUGCGUAt2g40140ATSZF2; CZF1; SZF2; ZFAR123322
At3g55980ATSZF1; SZF1N.A.
327UACAAUUAGCUAAGCAAGCGAAt1g11950jumonji (jmjC) domain-containing protein 23926
At1g62310jumonji (jmjC) domain-containing protein2
328UUUCUGCACAGUUGAACCCGCAt1g30810jumonji (jmj) family protein2.52421
At2g34880ARREST 27; MEE27; PKDM7C1.5
At4g20400JMJ14; PKDM7B2.5
329UUCAACAUGCCAGGCAAACAUAt3g48430REF6N.A.2317
At5g04240ELF63
At5g46910MQD22.40.5
330UAGGUGCGUCAAUAGCGACUAAt2g32700LUH2.51615
At4g32551LUG; RON21
331UUGGAGAUAUUACCGCGACUAAt1g01530AGL282.596
At1g65360AGL232.5
332UUAAGAUAGCGAUUCGUGCGUAt5g38620MADS-box transcription factor family protein1.52524
At5g49420MADS-box transcription factor family protein2
At5g49490AGL832.5
333UGCUUUGCUAUAUAGACGCGUAt1g46408AGL97N.A.6329
At5g04640AGL993
334UUACUUCCUAGACCGGGUCCUAt5g26950AGL93N.A.3627
At5g27070AGL531
335UAUACGCGAUCUUGUUGACGAAt3g30530ATBZIP42; BZIP42N.A.64
At5g38800ATBZIP43; BZIP432.5
336UUAGAUAGUGGAAGUAUCCAGAt1g13600ATBZIP58; BZIP581
At2g04038ATBZIP48; BZIP48N.A.
337UGUAAGCCUGUUUCGUAGCACAt2g41070ATBZIP12; DPBF4; EEL2.52017
At3g56850AREB3; DPBF3N.A.
338UUAGGCAAGGUCAACGGGCCUAt1g49720ABF12
At3g19290ABF4; AREB22.5
339UACACGUUUAGGGUGAGACCUAt2g21230Basic-leucine zipper (bZIP) transcription factor family protein N.A.2222
At4g38900Basic-leucine zipper (bZIP) transcription factor family protein3
340UAAUUCUGAUUAGCCACGCAUAt2g16770BZIP2321716
At4g35040BZIP19N.A.
341UAGCCUUAAGUUAUCACCCCGAt3g12250TGA6; BZIP4532524
At5g06960TGA5; OBF52
342UGAAUAUAGUCAAUCGUGCAGAt1g19180JAZ1; TIFY10A21614
At1g74950JAZ2; TIFY10B0
343UUUUGAAGCGAACGUCUCCUAAt3g43440JAZ11; TIFY3A0.52620
At5g20900JAZ12; TIFY3BN.A.
344UAGAAAAUGGCGUAGUGCCGAAt1g01260basic helix-loop-helix (bHLH) DNA-binding superfamily protein26427
At2g46510ATAIB; AIB2.5
345UAGUACGAGUAUCUGAACCUUAt2g36080B3 DNA-binding domain transcription factor1.52020
At5g06250AP2/B3-like transcriptional factor family protein2
346UAAGAACUGUCAUAACGGCAGAt1g47870E2F C; ATE2F2; ATE2FC12319
At2g36010ATE2FA; E2F; E2F31.5
347UACCACAUCAUAAAUAGGCCGAt3g01330DEL3; E2F-LIKE 2; E2FF; E2L231515
At5g14960E2FD; E2L1; DEL22
348UAACUCCUAAUUUCGCGGCGUAt3g48160DEL1; E2FE; E2L3; E2F-LIKE3N.A.1311
At5g14960DEL2; E2FD; E2L10.5
349UAAAGCUGAGCACUUUCGCGGAt2g40950BZIP171.52017
At3g10800BZIP281.5
At3g56660BZIP493
350UAAAACUAAUACUAGCGACCUAt2g40950BZIP1724527
At3g10800BZIP280.5
351UAACACUUCAGUGCACGUCCCAt2g40950BZIP171.51919
At3g56660BZIP49N.A.
352UAAAGUGACAUUCUGAGCCCCAt3g10800BZIP282.52218
At3g56660BZIP492.5
353UUUUAUACAUGUUGUGAGCCGAt4g04890PDF22.52118
At4g21750ATML11.5
354UACCCAUGACACAUGUGGCUCAt2g40140ATSZF2; CZF1; SZF2; ZFAR121818
At2g41900CCCH-type zinc finger protein with ARM repeat domain3
At3g55980ATSZF1; SZF12
355UUUGAAGGGUACAAACGACGCAt5g12850CCCH-type zinc finger protein with ARM repeat domainN.A.2115
At5g58620zinc finger (CCCH-type) family protein2
356UCUUGCGAUAAGUGGUGCCAGAt1g19350BES1; BZR232722
At1g75080BZR11.5
At3g50750BEH1N.A.
At4g36780BEH20.5
357UCUUUACACGGCUGGGUGCGGAt2g19810ATOZF1; OZF1N.A.1615
At2g25900ATCTH; ATTZF11
At4g29190Zinc finger C-x8-C-x5-C-x3-H type family protein1
358UAUCCUAGAUCAAGGUCGCUAAt1g03790SOMNUS; SOM2.52222
At5g44260Zinc finger C-x8-C-x5-C-x3-H type family protein1.5
359UAAACCUCAGUUUUGUAGCGCAt1g66810Zinc finger C-x8-C-x5-C-x3-H type family protein0.51715
At1g68200Zinc finger C-x8-C-x5-C-x3-H type family protein1.5
360UUGCAAAUAUAAGUUCGGCGCAt1g52150CNA; ICU4N.A.1313
At4g32880HB-82.5
Score: Probability of a transcript being a miRNA target, according to miRU (Plant microRNA Potential Target Finder) or to psRNATarget (from amiR-TPL325 to amiR-TPL360). The lower the score of a transcript, the higher its probability of being silenced by the amiRNA. The maximum score is 3.5, and depends on the number and position of mismatches (a maximum of 3) between the miRNA and its mRNA target. T2 lines confirmed: Lines confirmed to be resistant to hygromycin (15 µg/ml) among the first 30 T2 families obtained for each amiRNA in pMDC32. *amiRNA-producing construct obtained using the pBIN-JIT vector. N.A.: Not available.