Functional redundancy often hampers the analysis of gene families. To overcome this difficulty, we expressed artificial microRNAs (amiRNAs) designed to simultaneously target 2 to 6 paralogous genes encoding transcription factor family members in Arabidopsis (Jover-Gil et al., 2014). Of 338 tested transgenes, 21 caused a visible morphological phenotype in leaves, a proportion much higher than that expected from insertional mutagenesis. Therefore, this robust, versatile method enables functional examination of redundant paralogs and is particularly useful for genes arranged in tandem. Our amiRNAs have been deposited at the Arabidopsis Biological Resource Center.

amiR-TPL	amiRNA sequence (5´ to 3´)	Target genes	Protein products of the target genes	Score	T2 lines obtained	T2 lines confirmed
1	UUAGAUAGCAUUUAGACGCGU	At1g28450	AGL58	2	79	30
		At1g28460	AGL59	3
2	UAUAAACGCAACUUAAACACC	At1g28450	AGL58	2	34	23
		At1g28460	AGL59	2
3	UAUGAUUAAAAUCCACGGGAG	At1g31630	AGL86	1.5	49	27
		At1g31640	AGL92	2.5
4	UAGACUUAAAUCUUGAACGUC	At1g31630	AGL86	2	93	28
		At1g31640	AGL92	2
5	UUUUUGUGAAAGCAACUGUUU	At1g60880	AGL56	1.5	18	15
		At1g60920	AGL55	2
6	UAUUGCGAUUUGAGUGACUGG	At1g60880	AGL56	1.5	23	16
		At1g60920	AGL55	2
7	UAAAAAUCAUAAAGAGCCGGG	At1g65300	AGL38; PHE2	1.5	21	20
		At1g65330	AGL37; PHE1	1
8	UAUAGAGUUACUAGCUCGUUA	At1g65300	AGL38; PHE2	2.5	53	24
		At1g65330	AGL37; PHE1	0.5
9	UAUUUCCUUAGUUCGUCCUCU	At1g77950	AGL67	N.A.	25	24
		At1g77980	AGL66	1
10	UUUAGUAGGAACAAGGCGUUG	At5g26580	AGL34	2	16	16
		At5g26650	AGL36	2
11	UACAAGGUGUUGAAACGGUAC	At5g26580	AGL34	2	28	26
		At5g26650	AGL36	2
12	UAAUCCGAUAAAUAGGUCAGU	At5g51860	AGL72	2	18	15
		At5g51870	AGL71	1.5
13	UCCUUCUUAAAUAGACUGCUU	At5g51860	AGL72	3.5	94	28
		At5g51870	AGL71	1.5
14	UGUUCAGACAGUUACAUCGUG	At1g20700	WOX14	3	32	24
		At1g20710	WOX10	1
15	UGAUUUGCUUACGAAGUGUCU	At1g20700	WOX14	3.5	160	26
		At1g20710	WOX10	1.5
16	UCAAAAUUAUCAUUCGCGCAU	At4g18870	heat shock transcription factor family protein	2	27	26
		At4g18880	AT-HSFA4A	3
16*	UCAAAAUUAUCAUUCGCGCAU	At4g18870	heat shock transcription factor family protein	2	5	0
		At4g18880	AT-HSFA4A	3
17	UCAAUGAAAUGUGAUCUCUAG	At1g26590	zinc finger (C2H2 type) family protein	3.5	196	26
		At1g26610	zinc finger (C2H2 type) family protein	1.5
18	UCUGAUUUGAACAUGCUGAAG	At1g26590	zinc finger (C2H2 type) family protein	1.5	16	15
		At1g26610	zinc finger (C2H2 type) family protein	2
19	UUGAUAAUUAUGGUAUGGGAC	At3g07220	transcriptional activator	1	29	19
		At3g07260	forkhead-associated domain-containing protein	2
20	UUACAACUCUCUAUUCCGGAC	At3g07220	transcriptional activator	2.5
		At3g07260	forkhead-associated domain-containing protein	1.5
20*	UUACAACUCUCUAUUCCGGAC	At3g07220	transcriptional activator	2.5	1	1
		At3g07260	forkhead-associated domain-containing protein	1.5
21	UAUCGGACAAGUAUGAGGCGU	At3g46080	zinc finger (C2H2 type) family protein	1.5	54	27
		At3g46070	zinc finger (C2H2 type) family protein	2
		At3g46090	ZAT7	1.5
22	UAUUUUUUCAAAGUCGUCACU	At3g46080	zinc finger (C2H2 type) family protein	1.5	41	29
		At3g46070	zinc finger (C2H2 type) family protein	2
		At3g46090	ZAT7	2.5
23	UAAGAGAAAUAUUAAUCGGGG	At1g34390	ARF22	2.5	32	22
		At1g34410	ARF21	2
		At1g35240	ARF20	N.A.
		At1g35520	ARF15	2
		At1g35540	ARF14	2
		At1g34310	ARF12	2.5
24	UCAUUGGUUAUCAAAAGCGUG	At1g34390	ARF22	1.5	77	27
		At1g34410	ARF21	1.5
		At1g35240	ARF20	2.5
		At1g35520	ARF15	1.5
		At1g35540	ARF14	1.5
		At1g34310	ARF12	1.5
24*	UCAUUGGUUAUCAAAAGCGUG	At1g34390	ARF22	1.5	25	4
		At1g34410	ARF21	1.5
		At1g35240	ARF20	2.5
		At1g35520	ARF15	1.5
		At1g35540	ARF14	1.5
		At1g34310	ARF12	1.5
25	UGAAAUGGUUCAGUUUCGCGU	At5g25470	DNA binding protein	1.5	27	24
		At5g25475	DNA binding protein	1
26	UAAAUGCACUCUUACAGCGGA	At5g25470	DNA binding protein	N.A.	40	25
		At5g25475	DNA binding protein	1
26*	UAAAUGCACUCUUACAGCGGA	At5g25470	DNA binding protein	N.A.	16	4
		At5g25475	DNA binding protein	1
27	UAAACCCACUUACCGUAGUUU	At4g25470	DREB1C; CBF2	3	32	16
		At4g25480	DREB1A; CBF3	1.5
		At4g25490	DREB1B; CBF1	2
27*	UAAACCCACUUACCGUAGUUU	At4g25470	DREB1C; CBF2	3	15	3
		At4g25480	DREB1A; CBF3	1.5
		At4g25490	DREB1B; CBF1	2
28	UGUAUAAAUAGCUUCUACCAU	At4g25470	DREB1C; CBF2	1.5	7	7
		At4g25480	DREB1A; CBF3	3
		At4g25490	DREB1B; CBF1	0.5
28*	UGUAUAAAUAGCUUCUACCAU	At4g25470	DREB1C; CBF2	1.5	9	3
		At4g25480	DREB1A; CBF3	3
		At4g25490	DREB1B; CBF1	0.5
29	UAGUAAAUGAAUAAUGCCGAC	At3g26620	LBD23	1.5	38	25
		At3g26660	LBD24	1.5
30	UAUAUGGUGAGAAUACGGAAU	At3g26620	LBD23	2	18	15
		At3g26660	LBD24	2
31	UUUAAAGGAACUUGUUGCCAU	At1g66370	MYB113	2	32	26
		At1g66380	MYB114	1.5
		At1g66390	MYB90	2
		At1g56650	MYB75	3
32	UGCUUCAAAUAGUACAACCAU	At1g66370	MYB113	2.5	32	25
		At1g66380	MYB114	3
		At1g66390	MYB90	2
		At1g56650	MYB75	2
33	UUUCAUCAUAGAAUGAUGGUG	At2g26950	MYB104	1.5	53	21
		At2g26960	MYB81	3
34	UAAGUUCUCAACCGCGUGAAU	At2g26950	MYB104	1.5	35	24
		At2g26960	MYB81	3
35	UAAAUCACAUGAUCGUGCUUG	At1g60280	ANAC023	1.5	24	17
		At1g60300	apical meristem formation protein-related	1.5
		At1g60340	apical meristem formation protein-related	1.5
		At1g60350	ANAC024	1.5
		At1g60380	apical meristem formation protein-related	1.5
36	UAUCAGUUUAUCACGACGCAU	At1g60280	ANAC023	2	34	26
		At1g60300	apical meristem formation protein-related	2
		At1g60340	apical meristem formation protein-related	1
		At1g60350	ANAC024	2.5
		At1g60380	apical meristem formation protein-related	2.5
37	UUACUUCUUAUCUAACGCGCU	At3g10480	ANAC050	1.5	40	29
		At3g10490	ANAC051	2.5
38	UAACACAUAUGCAUCGUGCAC	At3g10480	ANAC050	1.5	29	26
		At3g10490	ANAC051	1.5
39	UAAACAAAUAUUCAACCGGCC	At4g01520	ANAC067	0.5	27	21
		At4g01540	ANAC068	1.5
		At4g01550	ANAC069	1.5
40	UAAGUGAUGUGAUACUCGUGA	At4g01520	ANAC067	0.5	17	17
		At4g01540	ANAC068	0.5
		At4g01550	ANAC069	1
41	UUAAUUCUGUCAACACGCGAC	At5g36670	PHD finger family protein	1.5	31	26
		At5g36740	PHD finger family protein	1.5
42	UAAACUAUCAGUUACACCCUC	At5g36670	PHD finger family protein	1.5	50	28
		At5g36740	PHD finger family protein	1.5
43	UAAGAUACCAUGUUGUAGUCC	At1g27360	SPL11	1.5	36	28
		At1g27370	SPL10	1.5
44	UCAAAUUCAUAGAAACCGGUG	At1g27360	SPL11	3.5	15	15
		At1g27370	SPL10	2
45	UGAAUCCGCUAUGUAAACGUU	At5g50570	squamosa promoter-binding protein	0	20	16
		At5g50670	squamosa promoter-binding protein	0
46	UAUUAAUAGUAACCACAGGCG	At5g50570	squamosa promoter-binding protein	1.5	14	13
		At5g50670	squamosa promoter-binding protein	1.5
47	UAUAAGUUUUGCCUUCCGAUU	At1g76880	trihelix DNA-binding protein	2	28	26
		At1g76890	GT2	3.5
48	UCUUUGACUUUCUGGAAGUAU	At1g76880	trihelix DNA-binding protein	1	21	18
		At1g76890	GT2	2
49	UUUUUGCAUAGGUACACCGAA	At1g66550	WRKY67	0.5	68	24
		At1g66560	WRKY64	0.5
		At1g66600	WRKY63	2
50	UUAAGUGGUUCUGUACACUAG	At1g66550	WRKY67	2	23	21
		At1g66560	WRKY64	2.5
		At1g66600	WRKY63	3
51	UAAGCUGUAAUGUUCACCGAU	At2g31210	basic helix-loop-helix (bHLH) family protein	2.5	38	25
		At2g31220	basic helix-loop-helix (bHLH) family protein	1.5
52	UAACAUCUCAGUGAGUUGUAG	At2g31210	basic helix-loop-helix (bHLH) family protein	2.5	23	20
		At2g31220	basic helix-loop-helix (bHLH) family protein	2
53	UAAAAGUUAUGAAUCUUGGCC	At3g56970	basic helix-loop-helix (bHLH) family protein	2	24	21
		At3g56980	basic helix-loop-helix (bHLH) family protein	2
53*	UAAAAGUUAUGAAUCUUGGCC	At3g56970	basic helix-loop-helix (bHLH) family protein	2	5	2
		At3g56980	basic helix-loop-helix (bHLH) family protein	2
54	UCAAAGUGUAGAAAAGCCUAU	At3g56970	basic helix-loop-helix (bHLH) family protein	3	31	28
		At3g56980	basic helix-loop-helix (bHLH) family protein	2
55	UAUGAUCCGAUAUUCACCUGG	At2g46670	pseudo-response regulator, putative	2	49	29
		At2g46790	APRR9	2
56	UAACUUUUCAUGUGAUACGGU	At2g46670	pseudo-response regulator, putative	1.5	60	30
		At2g46790	APRR9	1
57	UUAUCAGAAUGAAGGAACAAU	At5g15840	CO	1	29	25
		At5g15850	COL1	2.5
58	UAUGUUUCUUAAAACUCCACC	At4g21030	Dof-type zinc finger domain-containing protein	0.5	65	27
		At4g21040	Dof-type zinc finger domain-containing protein	2
		At4g21050	Dof-type zinc finger domain-containing protein	1
		At4g21080	Dof-type zinc finger domain-containing protein	1.5
59	UAAACAGUCACUACACCCUAC	At1g08000	zinc finger (GATA type) family protein	3	32	27
		At1g08010	zinc finger (GATA type) family protein	2
60	UUAUUCUGGAACUAUGCGACC	At1g08000	zinc finger (GATA type) family protein	2	54	28
		At1g08010	zinc finger (GATA type) family protein	2
77	UUUCUCUCAUCAAAUCGCCGU	At1g29560	nucleic acid binding / zinc ion binding	N.A.	44	27
		At1g29570	zinc finger protein-related	2
		At1g29600	zinc finger (CCCH-type) family protein	N.A.
78	UAUCACCGUUCCCGGACGAAG	At5g50470	NF-YC7	1	25	25
		At5g50490	NF-YC5	3
79	UUCUAUGCAAUAAAAACCAGC	At3g22760	CXC domain containing TSO1-like protein 1/SOL1	1.5	26	23
		At3g22780	putative DNA binding protein (tso1) mRNA, tso1-3 allele/TSO1	2.5
		At4g14770	TCX2	N.A.
80	UGAGUAAUGAAACAUCGCUUC	At1g07520	scarecrow transcription factor family protein	N.A.	24	18
		At1g07530	GRAS2;SCL14	1.5
81	UUAUACAUUUCUUCGAUCAUC	At1g75410	BLH3	1	26	25
		At1g75430	BLH11	2
		At1g19700	BLH10	0
82	UCAAAGUGCAAAGAUUGGCAU	At5g66610	DAR7	2.5	23	20
		At5g66620	DAR6	1.5
		At5g66630	DAR5	2
		At5g66640	DAR3	N.A.
		At5g17890	DAR4	1
83	UUAGAUAGAAAGAUGUAGCCU	At4g00238	DNA-binding storekeeper protein-related	2	26	21
		At4g00250	DNA-binding storekeeper protein-related	3.5
84	UGAAAACGAAGAAAACACUGG	At1g20693	HMGB2; NFD2	1	17	15
		At1g20696	HMGB3; NFD3	2
85	UUCAUAUUGAUAAACUGCCAU	At2g30420	ETC2	2.5	31	29
		At2g30432	TCL1	2
86	UAUUUCCACAUUGGCGCGGGG	At5g65050	AGL31; MAF2	1.5	24	16
		At5g65060	AGL70; MAF3	0.5
87	UAUUGAGAGUUGACGACCUUU	At5g65070	AGL69; MAF4	2	35	21
		At5g65080	AGL68; MAF5	2
88	UUCGAUGAAAAGCCGACGCAG	At1g55650	high mobility group (HMG1/2)	2.5	33	24
		At3g13350	high mobility group (HMG1/2)	1.5
89	UAACCUUCUUAAACGCGCGUU	At1g14685	ATBPC2; BBR/BPC2	2	51	21
		At2g01930	ATBPC1; BPC1/BBR	2
90	UAAGUCGCUAAAAACCACUUC	At1g14510	AL7	2	39	29
		At2g02470	AL6	3
91	UCUAUCUACAAAUAGUGCGUU	At1g19350	BES1; BZR2	0.5	38	27
		At1g75080	BZR1	3
92	UACCUUGCAUAGCGCGUGAUG	At1g20910	ARID/BRIGHT DNA-binding domain-containing protein	3.5	30	25
		At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	3.5
		At2g17410	ARID/BRIGHT DNA-binding domain-containing protein	1.5
93	UAAGUAUGAAGAAGUACGCUU	At4g11080	HMG1/2 family protein	2	18	16
		At4g23800	HMG1/2 family protein	2.5
94	UAUUGCGAUUAAGACGCGCUC	At3g11200	AL2	1.5	75	26
		At5g05610	AL1	2.5
95	UAUUUAUGUUGCUCAUACGGG	At5g08190	NF-YB12	1	20	18
		At5g23090	NF-YB13	1.5
96	UUAUCACGGAAAUUCAGCGAU	At3g16940	calmodulin-binding protein	0.5	50	26
		At4g16150	calmodulin binding / transcription regulator	1
97	UAAUGUAGCACAUGUAUGCUU	At5g09410	CAMTA1; EICBP.B	1	18	15
		At5g64220	calmodulin-binding protein	2.5
98	UACCAUUGAAAUGUGUCGUUU	At1g54160	NF-YA5	1	26	19
		At3g14020	NF-YA6	2
99	UGAUUAGUUUGUUUUGCGCGU	At1g17590	NF-YA8	1	21	19
		At1g72830	NF-YA3; ATHAP2C	2
100	UAUGGAUCCUGAUAUGGGUUA	At3g20910	NF-YA9	1.5	29	21
		At5g12840	NF-YA1; ATHAP2A	0
101	UAAAUGCCGAGAUUUAUGCAU	At1g30500	NF-YA7	1	30	22
		At2g34720	NF-YA4	0.5
102	UGUUACCCAUAACUAUUCCCG	At1g08970	NF-YC9; HAP5C	1	22	22
		At1g54830	NF-YC3	0.5
103	UAAUGAUGCAUAUAUGGCCUG	At3g05690	NF-YA2; HAP2B	1	17	15
		At5g06510	NF-YA10	3
104	UGAAAUCAAAGAUGACCGUUU	At5g27910	NF-YC8	1.5	27	22
		At5g50490	NF-YC5	1
105	UAGUUAGCUUAGCUUUACCGG	At4g00232	unknown protein	0.5	27	21
		At5g41765	unknown protein	2.5
106	UAUCGUUUUUCUGAUGCGUAC	At3g48590	NF-YC1; ATHAP5A	1	21	19
		At5g63470	NF-YC4	1
107	UUUCAUAAAACGGCGCCCUAU	At3g04930	transcription regulator	1.5	20	20
		At5g28040	transcription regulator	1
108	UCAAUCGUCAAAGAAACGCCU	At2g36400	ATGRF3	2	21	19
		At3g52910	ATGRF4	1
109	UAACUCUUUUCGGAAAUCCUG	At2g17560	HMGB4; NFD4	1	40	24
		At3g56140	unknown protein	3
110	UUACUUAACUAUCUGUCCGUC	At1g32330	ATHSFA1D; HSFA1D	2	19	7
		At4g17750	ATHSF1; HSFA1A	0.5
111	UAUAAAACCAGUCAUAUCACC	At1g55950	unknown	1	25	24
		At2g01370	DNA-binding storekeeper protein-related	1
112	UUUUUCGAUAGGAUACACGAU	At2g39900	LIM domain-containing protein	1	22	19
		At3g55770	LIM domain-containing protein	2
113	UAGACCUAGUAAAUUUCGGAG	At2g25650	DNA-binding storekeeper protein-related	0	57	24
		At4g00270	DNA-binding storekeeper protein-related	1
114	UAUACUUAUAGAUCGACGCCU	At2g22840	ATGRF1	0.5	33	27
		At4g37740	ATGRF2	2
115	UAUGUCAGGUAAGAUCACUUC	At4g26170	unknown protein	1	48	26
		At5g56780	ATET2; ET2	0.5
116	UAAACCAUAUGUAUUAGGCUG	At4g18880	AT-HSFA4A; HSF A4A	1.5	17	16
		At5g45710	HSFA4C; RHA1	0.5
117	UUAAAACGCAUUAGUACCUGC	At1g61730	DNA-binding storekeeper protein-related	1.5	48	29
		At4g00390	transcription regulator	1
118	UAGAGGACAAGGGCCCGCGUU	At5g67000	member of ERF B-6	1.5	22	17
		At5g67010	member of ERF B-6	1.5
		At2g20350	member of ERF B-6	1
119	UAAGCCAUAUCGUAGACCUCG	At4g25400	bHLH family protein	2.5	19	18
		At5g51780	bHLH family protein	1
120	UAUGAAACUUACUGCUCCGUU	At4g25410	DNA binding / transcription factor	2	48	28
		At5g51790	bHLH family protein	0
121	UUAAUGAAUUGCGACGGGACG	At2g12900	DNA binding / transcription factor	1.5	35	27
		At2g12940	UNE4	1
		At2g13150	transcription factor	2.5
122	UGUAUAGUCACAAAUCCCGUU	At2g40340	member of the DREB subfamily A-2 of ERF/AP2 transcription factor	1.5	15	15
		At2g40350	member of the DREB subfamily A-2 of ERF/AP2 transcription factor	0.5
123	UACUUGUAUUGCUUGAUGUGA	At5g20510	AL5	2	42	29
		At5g26210	AL4	0.5
		At3g42790	AL3	2
124	UAUCAAAACUAUCUCAUGCCC	At4g31640	transcriptional factor B3 family protein	0.5	19	16
		At4g31650	transcriptional factor B3 family protein	0.5
		At4g31680	transcriptional factor B3 family protein	3
		At4g31690	transcriptional factor B3 family protein	0.5
125	UCUGUAUUGAUUAACGCCAUU	At1g64530	RWP-RK domain-containing protein	1	27	24
		At4g24020	NLP7	2
126	UUAAUACCCAAUUCGCCGCAU	At1g74480	RWP-RK domain-containing protein	3	38	23
		At1g18790	RWP-RK domain-containing protein	1
127	UUUUCCCUUUGUAUAUCGACU	At1g14410	WHY1; PTAC1	1	32	27
		At2g02740	WHY3; PTAC11	2
128	UGUAUAGAAUGAAUCGAGUGG	At2g17150	RWP-RK domain-containing protein	1	38	23
		At4g35270	RWP-RK domain-containing protein	1.5
129	UUUCUGAAGAAAACUAUGGAG	At1g30135	JAZ8; TIFY5A	1	35	20
		At2g34600	JAZ7; TIFY5B	1.5
130	UUCUCUAAGAACCUAGCCAAG	At3g17860	JAZ3; TIFY6B	1.5	51	30
		At1g48500	JAZ4; TIFY6A	1
		At1g70700	JAZ9; TIFY7	1.5
131	UACAUAACGUUUGAUGUGCAU	At2g43500	RWP-RK domain-containing protein	1	41	27
		At3g59580	RWP-RK domain-containing protein	1
132	UGAUUACGUUUGAUAAGGCAU	At5g18680	ATTLP11	0.5	56	28
		At3g06380	ATTLP9	1.5
133	UGUCAAAACUCGCUUACCGUC	At1g20640	RWP-RK domain-containing protein	0.5	36	28
		At1g76350	RWP-RK domain-containing protein	1
134	UAAUAUAUGUCUGAACGCAAG	At1g76590	zinc-binding family protein	2	21	19
		At1g21000	zinc-binding family protein	0.5
135	UACAUUCACUCUUAUGUGAAG	At1g32700	zinc-binding family protein	0	49	25
		At4g17900	zinc-binding family protein	N.A.
136	UCAUAUAUGAACAAGUGCCUC	At5g67480	BT4	1	22	15
		At4g37610	BT5	1.5
137	UACAAAAGUAAUGACGAGUGA	At1g79000	HAC1; PCAT2	0	22	21
		At1g16710	HAC12	1
138	UAUGAAAGUUUGAUCUAGUUC	At2g38250	DNA-binding protein-related	0.5	30	21
		At5g01380	transcription factor	1
139	UUGUUAUCUUGUCUUAUGGGU	At2g20825	ULT2	1	20	19
		At4g28190	ULT1	2
140	UAAAGAUGUUUAGAGCUCACG	At1g21200	transcription factor	2	12	12
		At1g76870	unknown	1
141	UUCUUGACUUGCAAUUACCAU	At1g14440	ATHB31	1	34	28
		At2g02540	ATHB21; ZFHD4	1.5
142	UGAAUAUGGUCAACUGCGAAU	At1g17380	JAZ5; TIFY11A	1.5	72	25
		At1g72450	JAZ6; TIFY11B	1
143	UUUUUGUGAAUAUGCAGGGUU	At4g14713	PPD1; TIFY4A	2.5	51	28
		At4g14720	PPD2; TIFY4B	1
144	UUAAUAUCGAUGUCCUGUCGA	At5g10570	bHLH family protein	3	39	22
		At5g65640	bHLH093	1
145	UAUCUUGCGGGUAUAUGACAG	At1g22490	bHLH family protein	0.5	23	19
		At1g72210	bHLH family protein	2.5
146	UUACCUGCUUAUACGUCCCUC	At1g28050	zinc finger (B-box type) family protein	2	44	24
		At2g33500	zinc finger (B-box type) family protein	N.A.
147	UAAUUCUGAUUAGCCACGCAU	At4g35040	bZIP transcription factor family protein	2.5	33	28
		At2g16770	DNA binding / transcription factor	1
148	UAGUCUGUACUUUUCUCGCGA	At1g06070	bZIP69	1
		At2g31370	POSF21	1.5
149	UUUUCGUGGCUUAAGGACCUC	At4g28140	member of the DREB subfamily A-6 of ERF/AP2 transcription factor family	2.5	36	25
		At2g20880	AP2 domain-containing transcription factor	2
150	UAGUACGGUGCCAAAACACAU	At1g07900	LBD1	1	48	27
		At2g28500	LBD11	0
151	UAUGUACACCCAUGAAUCCUG	At3g07340	bHLH family protein	1	31	28
		At5g48560	bHLH family protein	1
152	UACAAUUAGCUAAGCAGUCGA	At1g11950	transcription factor	1	36	26
		At1g62310	transcription factor jumonji (jmjC)	1
153	UUCAAACUCGGGACUUGUCUG	At1g01520	myb family transcription factor	1.5	17	16
		At4g01280	myb family transcription factor	2.5
154	UUAGUGUUAGGUGAGUGACAG	At1g51700	ADOF1	1	29	24
		At3g21270	ADOF2	2
155	UGAAAAUCAUGCCGCAAACGA	At1g29160	Dof-type zinc finger domain-containing protein	2	30	28
		At2g34140	Dof-type zinc finger domain-containing protein	2
156	UCAUGAGUAACACAGUGUCUU	At3g06740	GATA15	2.5	20	17
		At5g49300	GATA16	1.5
157	UACAUAGUGUUUUACGUCCAA	At2g45050	GATA2	1	33	28
		At3g60530	GATA4	2.5
158	UCACUCGAAAAUGUUGCGCUU	At3g51080	GATA6	1	26	25
		At5g66320	GATA5	2.5
159	UACUCGAUCUAUUACUAGCAU	At4g17570	GATA26	0	24	21
		At5g47140	GATA27	2
160	UCUUAGAAUCUCGUUAUGCGA	At1g55110	ATIDD7	0	28	20
		At3g13810	ATIDD11; MCP4.2	1
161	UCACAUUCAGUACAUGGACGU	At2g17180	zinc finger (C2H2 type) family protein	1	66	25
		At4g35280	zinc finger (C2H2 type) family protein	0
162	UAGUAACGCAUGAAUUCACGA	At2g24500	FZF	2.5	17	17
		At4g31420	zinc finger (C2H2 type) family protein	0
163	UAAGUCUCACACUUGAAUCUA	At2g45120	zinc finger (C2H2 type) family protein	0.5	25	20
		At3g60580	zinc finger (C2H2 type) family protein	3
164	UAUUCACACAUAGGAUGUCCG	At2g47090	nucleic acid binding / protein binding / zinc ion binding	2	23	20
		At3g62240	zinc finger (C2H2 type) family protein	1
165	UUUAAUCGCAUUGCGUCGCUU	At3g27970	exonuclease/ nucleic acid binding / zinc ion binding	2.5	41	24
		At5g40310	exonuclease family protein	1
166	UGAGUUAUCUAAAUGUACCGG	At3g50700	ATIDD2	1	25	19
		At5g66730	zinc finger (C2H2 type) family protein	2.5
167	UACAAAUGCGCUUCGUACCUU	At1g16060	ADAP	1	24	22
		At1g79700	ovule development protein, putative	1.5
168	UUCUAAACAUAAAGGGACCUC	At1g25550	myb family transcription factor	1	44	23
		At1g68670	myb family transcription factor	1.5
169	UAUUGGUGAAUCCGGACGCAA	At2g19810	zinc finger (CCCH-type) family protein	2	65	28
		At4g29190	zinc finger (CCCH-type) family protein	1
170	UAUUAUGAUGUGAUCCAGCGU	At2g41130	bHLH family protein	0.5	22	19
		At3g56770	bHLH family protein	0.5
171	UAUGUGUGGUAUGUACGUCUA	At1g64000	WRKY56	0.5	17	17
		At5g41570	WRKY24	1.5
172	UUUGACGUAACGAUUGCCCGA	At5g05550	transcription factor	1	16	14
		At3g11100	transcription factor	2.5
173	UUUGAUCCUAUUUUGUACCUA	At1g33280	BRN1	1.5	21	19
		At4g10350	BRN2	3
174	UUAUUGGACUAAGUGGUGCUA	At5g10120	ethylene insensitive 3 family protein	2	18	16
		At5g65100	ethylene insensitive 3 family protein	1
175	UAUGUAAUAUGGACCUGGCUG	At1g04990	zinc finger (CCCH-type) family protein	3	19	17
		At2g32930	ZFN2	1.5
176	UGUAUAAUCCGACAGACGCGA	At5g54630	zinc finger protein-related	1	20	17
		At4g27240	zinc finger (C2H2 type) family protein	1
177	UUUGAAUCGGAUUACACGCGC	At2g18380	GATA20	1.5	20	18
		At4g36620	GATA19	1.5
178	UAUGAUGGCUUGAAAACGCGU	At1g04500	zinc finger CONSTANS-related	3	42	27
		At2g33350	unknown	2
179	UUUAAAUUUGUUGGCGGGCCU	At1g32150	BZIP68	2.5	30	22
		At2g35530	BZIP16	1
180	UAAAUGCUACGCCAAUCGCAU	At5g08520	myb family transcription factor	1.5	28	23
		At5g23650	myb family transcription factor	2
181	UAAUUUACGUACCUCGGACCG	At1g25440	zinc finger (B-box type) family protein	1	31	28
		At1g68520	zinc finger (B-box type) family protein	1.5
182	UAAUUGGUUAACCAGACGCGG	At2g22850	ATBZIP6	1.5	22	18
		At4g37730	ATBZIP7	2
183	UUAUAUGCUUUAAUGCGUCGC	At4g37850	bHLH family protein	1.5	16	16
		At2g22750	bHLH family protein	2.5
184	UGAUAUACGAAAUAGCGUCGC	At4g17880	bHLH family	1.5	21	19
		At5g46760	bHLH family	2
185	UAAACGGCCGUUAUCACGCUU	At2g24260	LRL1	0	84	27
		At4g30980	LRL2	3
186	UGUAUUGACAUGUUUUUCCGA	At2g41835	zinc finger (C2H2 type, AN1-like) family protein	1.5	46	20
		At3g57480	zinc finger (C2H2 type, AN1-like) family protein	2
187	UAUAUUAUAGCUCAUCCACGC	At1g53910	RAP2.12	1.5	18	16
		At3g14230	RAP2.2	3
188	UUACAUAAUCGACAAUGUCGU	At1g03040	bHLH family protein	1	52	27
		At4g02590	UNE12	1.5
189	UGUUUUCCGGCAUGGAUACUA	At1g63820	unknown	1.5	28	24
		At5g41380	unknown	1
190	UCAAUCUUGGUAAUCAGGCGU	At3g21880	zinc finger (B-box type) family protein	3	18	17
		At4g15250	zinc finger (B-box type) family protein	1.5
191	UAAAGUACACCUCAAGGGCAG	At2g45880	BAM7; BMY4	1	67	24
		At4g00490	BAM2; BMY9	1.5
192	UUACAGCAUUGUAACCCCCGG	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	2	55	27
		At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	N.A.
193	UGACUGAUUUUAUCUGGUCAU	At2g35430	zinc finger (CCCH-type) family protein	1	49	24
		At1g32360	zinc finger (CCCH-type) family protein	N.A.
194	UUUAUCACAGCCUGCGACCGG	At2g42300	bHLH family protein	1.5	23	18
		At3g57800	bHLH family protein	1.5
195	UAACCGAAUUUACACUGGCAG	At3g06410	nucleic acid binding / zinc ion binding	2	28	16
		At5g18550	nucleic acid binding / zinc ion binding	1.5
196	UGAGAUCGUACGUAAGGUCAU	At1g14600	DNA binding / transcription factor	2	23	22
		At2g02060	transcription factor	2.5
197	UUAAGAGCGUUCAACAAGCGU	At1g13300	HRS1	2.5	23	23
		At3g25790	myb family transcription factor	1
198	UUACUAGGCAUAACCCAGCGA	At3g24120	myb family transcription factor	2.5	22	19
		At4g13640	UNE16	2
199	UAAUCGAUAAUGUGUAUCCGU	At2g45160	HAM1	2	21	19
		At3g60630	HAM2	2.5
200	UACAGUUAACGACGAGCGCUU	At3g49950	scarecrow transcription factor family protein	1	24	16
		At5g67411	unknown	N.A.
201	UACUGCGUAAUUACUCAGCUU	At3g50650	SCL7	2.5	21	20
		At5g66770	scarecrow transcription factor family protein	0
202	UUGAUGUGUAAGGCUUACCUG	At1g19700	BLH10; BEL10	1	30	24
		At1g75410	BLH3	2.5
203	UAUUAGCGAUAUGAGCAACUA	At4g17710	HDG4	0.5	19	18
		At5g46880	HDG5/HB7	2
204	UUCAACGUCGAACCAUGUCGG	At1g18710	MYB47	2.5	16	16
		At1g74430	MYB95	1.5
205	UCAAAUGAGUGUGCGAAACUU	At1g06180	MYB13	N.A.	26	22
		At2g31180	MYB14	2
206	UUUGAACCAGCGAUCCGGCGU	At3g11280	Putative transcription factors interacting with the gene product of VHA-B1	1.5	19	15
		At5g05790	myb family transcription factor	1
207	UUACGUGCAAUUGUCGACCAU	At3g24310	MYB305; ATMYB71	2	35	21
		At4g13480	ATMYB79	1.5
208	UUAAAACGUUUAGAUGGCCGG	At3g02940	MYB107	2.5	20	17
		At5g16770	ATMYB9	1
209	UUAUUGGAACAAUUGGACCUU	At5g10280	MYB92	2	51	29
		At5g65230	ATMYB53	1
210	UCGUUCCAAUUAUGGGGGCCA	At1g17950	MYB52	1
		At1g73410	MYB54	3
211	UAACUGCCAAAUGUCAUGCAC	At1g25340	MYB116	2	22	20
		At1g68320	MYB62	1
212	UGAUGUAGGUAAUUAACGCAU	At3g46130	MYB48/MYB111	1	14	11
		At5g59780	MYB59	2
213	UAAGAUUUACCAGAGCGCCCU	At2g39880	MYB25	1	24	17
		At3g55730	MYB109	2
214	UAAUUUCCACGCUUAAUCCCG	At3g47600	MYB94	1.5	26	23
		At5g62470	MYB96	1
215	UGUAACUGAGCAGGCAUGCGG	At4g26930	MYB97	1.5	28	26
		At5g55020	MYB120	1.5
216	UAAGUUACGCCACUUAUCCUU	At1g17520	DNA-binding protein, putative	1.5	17	17
		At1g72740	DNA-binding family protein / histone H1/H5 family protein	0
217	UGUCAACGACGGAUCGCGCUU	At2g22800	HAT9	2	23	22
		At4g37790	HAT22	1.5
218	UUAAUGCCUUAACGUGCUCUU	At3g01220	ATHB20	1.5	18	17
		At5g15150	HAT7; ATHB3	2
219	UAUCGUACUGUUUGGCGACGC	At4g17460	HAT1	2	23	21
		At5g47370	HAT2	2
220	UGAUUGUUCAAACUGACGCAC	At1g19000	myb family transcription factor	1.5	38	29
		At1g74840	myb family transcription factor	1
221	UACUACGUUUCCGACAGGCUA	At2g42150	DNA-binding bromodomain-containing protein	0.5	15	14
		At3g57980	DNA-binding bromodomain-containing protein	0.5
222	UAAUUGAAGCGAUAGUACCGA	At2g44430	DNA-binding bromodomain-containing protein	1	20	17
		At3g60110	DNA-binding	2
223	UACUUAUCGGGUAAGUCCCUA	At3g44290	ANAC060	2	25	23
		At5g22290	ANAC089	1.5
224	UAACUAGACUCCCGUCCCCUG	At1g17460	TRFL3	1	27	17
		At1g72650	TRFL6	3
225	UUAAUGGUUGACUGACAUCUA	At3g11580	DNA-binding protein, putative	1	17	17
		At5g06250	transcription factor MHF15	3
226	UAGUACCACUUAAGAUCGCCU	At5g09330	ANAC082; VNI1	N.A.	24	24
		At5g64060	ANAC103	2
227	UUGACUCAGUCCGAGUGCCGG	At1g52890	ANAC019	2	23	21
		At3g15500	ANAC055; ATNAC3	1
228	UAGUCUUGUGCCAGCGAACGG	At3g01600	ANAC044	3	30	24
		At5g14490	ANAC085	1
229	UAUAUGCGUCCUGCGUGCCGA	At3g03200	ANAC045	1	16	16
		At5g17260	ANAC086	1
230	UCAUAGUCGAUAUUGAUGCAU	At4g17980	ANAC071	2.5	24	22
		At5g46590	ANAC096	1
231	UUAGUCAUAAACGACACUCGU	At4g18170	WRKY28	1	26	21
		At5g46350	WRKY8	2
232	UAAAAUGCCGAUUCUGGUCUG	At2g44150	ASHH3; SDG7	1	19	18
		At3g59960	ASHH4; SDG24	2
233	UAAUAGGUGUGUUAUGCGCCA	At3g02890	PHD finger protein-related	1.5	17	14
		At5g16680	PHD finger family protein	2
234	UAUGCUAAAAUCAUGGGACGU	At2g37520	PHD finger family protein	1	20	19
		At3g53680	PHD finger transcription factor	2
235	UGUAUAUAGCAAUUAGCGCAA	At1g55970	HAC4; HAC6; HAG4; ATHPCAT2	1.5	13	6
		At3g12980	HAC5; ATHPCAT4	1
236	UAAACGUCUGAUGACCGCCUA	At3g01030	nucleic acid binding / transcription factor/ zinc ion binding	3	19	18
		At5g15480	zinc finger (C2H2 type) family protein	1
237	UACUCGUACUUUGCGUGACAA	At3g02790	zinc finger (C2H2 type) family protein	N.A.	26	24
		At5g16470	zinc finger (C2H2 type) family protein	1
238	UAUUUGAACUUACAGUCCCCA	At5g63260	zinc finger (CCCH-type) family protein	0	20	19
		At3g48440	zinc finger (CCCH-type) family protein	1
239	UAAAUAUGCCCCCGCGACCUA	At4g25440	ZFWD1	1	18	17
		At5g51980	ZFWD2	1
240	UUAUCGUAAGAGCUCAACCUA	At1g74930	ORA47	N.A.	24	22
		At1g19210	member of the DREB subfamily A-5 of ERF/AP2 transcription factor family	1.5
241	UUUUAAUAGCUAAAGUCGCAA	At3g60490	member of the DREB subfamily A-4 of ERF/AP2 transcription factor family	1.5	34	28
		At2g44940	member of the DREB subfamily A-4 of ERF/AP2 transcription factor family	2.5
242	UGAAUUUAGCGACGAACACGG	At4g37540	LBD39	1	20	16
		At3g49940	LBD38	1.5
		At5g67420	LBD37; ASL39	1
243	UUAGUUCCGCAAUCAACCCAA	At3g16870	GATA17	1	21	17
		At4g16141	sequence-specific DNA binding / transcription factor/ zinc ion binding	3
244	UAUGGCACUUUAUGUCGUCUG	At1g25250	ATIDD16	0.5	16	15
		At1g68130	ATIDD14	2
245	UUAACCCUAGAUGAACAUCUA	At1g51220	WIP5	1.5	28	26
		At3g20880	WIP4	1.5
246	UACGAAACGUUUGUGUGGCAG	At3g10760	myb family transcription factor	2.5	22	16
		At5g05090	myb family transcription factor	1.5
		At2g40970	MYBC1	1.5
247	UUUAGACGGAGUUUGUUUCGC	At1g70920	ATHB18	2.5	14	13
		At2g01430	ATHB17	1
248	UUAAGCUUACCAUUGAACCAG	At1g50620	PHD finger family protein	2	20	17
		At3g20280	PHD finger family protein	2
249	UUAUGAUAGAAGGCUUAGCUC	At5g08330	TCP family transcription factor, putative	1	19	18
		At5g23280	TCP family transcription factor, putative	2.5
250	UCAAUUCGGGUGCGUGCGCUU	At5g56270	WRKY2	2.5	9	9
		At4g26440	WRKY34; MSP3	0.5
251	UAAUGGUACGCCAUUUUGCAG	At3g49850	TRB3; TBP2	1	24	19
		At5g67580	TRB2; TBP3	N.A.
252	UAUUUGGCGTGAAAGACACAU	At1g04050	SUVR1	1.5	19	17
		At5g43990	SUVR2	3
253	UUGAACUGACCUUUAUCGCGU	At1g51600	GATA28; TIFY2A; ZML2	1	24	23
		At3g21175	GATA24; TIGY2B; ZML1	3
254	UGACGUCUGUCAAACGCUCGC	At5g22380	ANAC090	N.A.	20	18
		At3g44350	ANAC061	2
255	UGACUUGCUACCAUUCAGCAU	At3g04060	ANAC046	1.5	27	22
		At5g18270	ANAC087	1
256	UUAGUGACACUCGAAUCGCAU	At2g41940	ZFP8	2	18	16
		At3g58070	GIS	2
257	UAAAAUCCCGAGUUUGCGCUA	At1g03840	MGP	2	20	15
		At5g44160	NUC	N.A.
258	UAGGACACUUUAGGGCGCCCG	At1g07640	OBP2	2	21	17
		At2g28810	Dof-type zinc finger domain-containing protein	2
259	UAUUUCACUGUUAUGAGCCUA	At1g13450	DNA binding protein GT-1	1	48	28
		At3g25990	DNA-binding protein GT-1-related	2.5
260	UUACUCACAAACAACUUGCGU	At1g18835	MIF3	N.A.	20	17
		At1g74660	MIF1	2.5
261	UCCUAUAUUCAAUAAGGCCAG	At1g19270	DA1	0.5	30	21
		At4g36860	AP22_33	1
262	UAUUCAAUUGUAUUGUGGCUG	At1g26960	ATHB23	1	22	19
		At1g69780	ATHB13	3
263	UAAAUCAACGACCGAUGACGG	At1g53170	ATERF8; ERF8	1.5	30	25
		At3g15210	ATERF4; ERF4; K7L4.1; RAP2.5	0.5
264	UAUUUACGGUCUUUCUGGCUG	At1g56010	ANAC021; ANAC022	3	26	25
		At3g12977	DNA binding	N.A.
265	UAUAUCGCAUCCCUUAACCAA	At2g16400	BLH7	1	55	27
		At4g34610	BLH6	3
266	UUUUGCACGUGACGUGUCCCG	At2g24790	ATCOL3; COL3	2	25	24
		At5g24930	ATCOL4; COL4	1
267	UUACUUUGGAUCGCUACGCGC	At2g25180	ARR12	1.5	27	19
		At4g31920	ARR10	1
268	UAGUAUAAAGCAUUGGUGCUG	At2g24500	FZF	3	25	23
		At4g31420	zinc finger (C2H2 type) family protein	2
269	UAUCCCAAAAAUAAUCCCCGG	At2g46310	CRF5	1	22	17
		At3g61630	CRF6	2.5
270	UUAGAGGAUAGCUUAACACAU	At3g02830	ZFN1	1.5	30	22
		At5g16540	ZFN3	1
271	UGAUAUCUAACAAUUUGGCUG	At3g02990	ATHSFA1E; HSFA1E	2.5	24	22
		At5g16820	ATHSF3; ATHSFA1B; HSF3; HSFA1B	1.5
272	UUAUAAACACCGUUAUACCCC	At3g03660	WOX11	N.A.	25	23
		At5g17810	WOX12	2.5
273	UAUCAGAUCGACAAUACGCCA	At3g07650	COL9	3	19	16
		At5g48250	zinc finger (B-box type) family protein	0.5
274	UUGUGGAUGUUCAUACGCCAU	At3g09290	TAC1	2	25	19
		At3g53820	zinc finger (C2H2 type) family protein	3
275	UUUACCGUAGAAACUUAGCUA	At3g11260	WOX5	3	31	27
		At5g05770	WOX7	1
276	UAUUUUCGGUCUCUCACGCAU	At3g29035	ANAC059; ATNAC3	1	20	17
		At5g39610	ATNAC2; ORE1; ANAC092; ATNAC6	1
277	UAUGAUAUCCUUGCAUACCCG	At3g46640	PCL1; LUX	0.5	19	18
		At5g59570	myb family transcription factor	1
278	UGUUACAAAUGAUGUUCUCGU	At3g49690	ATMYB84; RAX3	2.5	30	26
		At5g65790	ATMYB68;	2
279	UGUAACUCCUCACUUUAGCUU	At3g50060	MYB77	0.5	20	16
		At5g67300	ATMYB44 ATMYBR1	2
280	UGAAUGUCACGGACAGUACAU	At3g50410	OBP1	N.A.	22	20
		At5g66940	Dof-type zinc finger domain-containing protein	2
281	UUAGUACCAUCGACAACGCAC	At4g04260	bromo-adjacent homology (BAH) domain-containing protein	1	18	17
		At4g22140	EBS	2.5
282	UAGAACACCGUAAUGUUUCUU	At2g22430	ATHB6	1.5	32	25
		At4g40060	ATHB16	2.5
283	UCACUUAAAGACCAGCGCCAU	At5g02810	APRR7; PRR7	1	30	26
		At5g60100	APRR3; PRR3	1.5
284	UACAUUAGCGAGACGAUACUU	At5g08790	ANAC081; ATAF2	0.5	12	9
		At5g63790	ANAC102	0.5
285	UUACUUUAGAUACUAGUUCCC	At3g04030	myb family transcription factor	1	20	16
		At5g18240	MYR1	2.5
286	UUUAGGUAGUUAGUGCGUCUG	At3g01140	ATMYB106	1.5	14	13
		At5g15310	ATMYB16	2
287	UUUUAUAGUGUCAGCUACCGA	At1g53230	TCP3	1	24	21
		At3g15030	MEE35; TCP4	1
288	UCUUACAAGACUAUUUCGCUA	At5g50570	squamosa promoter-binding protein	1.5	26	22
		At5g50670	squamosa promoter-binding protein	1.5
289	UUCUGAAUUCACGCUUCGCAU	At2g46670	pseudo-response regulator, putative / timing of CAB expression 1-like protein	1.5	23	20
		At2g46790	APRR9; PRR9; TL1	1.5
290	UUUAUUUCCACAUUGGCGCGG	At5g65050	AGL31; MAF2	1.5	29	28
		At5g65060	AGL70; MAF3; FCL3	0
291	UUCUAAUUACAGACAGCGCAU	At5g65070	AGL69; MAF4; FCL4	3	30	27
		At5g65080	AGL68; MAF5	1.5
292	UAACUGACUUGUCAGAUGCCC	At1g20693	HMGB2; NFD02	N.A.	20	18
		At1g20696	HMGB3; NFD03	2
293	UGUAUCAGAAUGAACGAACUA	At5g15840	CO; FG	2	18	14
		At5g15850	ATCOL1	N.A.
294	UGAAAACAGUCACUAAGCCAU	At1g08000	GATA10	2	63	29
		At1g08010	GATA11	1.5
295	UAUUUCAUAGACCUACGACCA	At1g27360	SPL11	1	29	20
		At1g27370	SPL10	2
296	UAAUAUUCAACCGGCUCUCGG	At4g01520	ANAC067	0.5	43	28
		At4g01540	ANAC068; NTM1	2
		At4g01550	ANAC069	1
297	UGAAAUGCACUCUUAUAGCGU	At5g25470	DNA binding	N.A.	21	20
		At5g25475	DNA binding	1
298	UUAAUAGCUCACGACUGCCUC	At3g10480	ANAC050	2	22	20
		At3g10490	ANAC051	2
299	UUUAUCGCAUGCAAAUGUCGC	At1g30500	NF-YA7	1	27	25
		At2g34720	NF-YA4	2
300	UUUCGAGAAUGAAUAGGUCAC	At3g48590	ATHAP5A; NF-YC1	2.5	28	25
		At5g63470	NF-YC4	2
301	UUUUGUAAAUCGAAUGGCCCA	At1g14410	AtWHY1; PTAC1	1.5	31	26
		At2g02740	ATWHY3; PTAC11	0.5
302	UCAUAUGUAUUAAGGUGGCGG	At4g18880	HSF A4A	2	25	25
		At5g45710	HSFA4C; RHA1	1.5
303	UUCAAAACUCGCUUACGACCU	At1g20640	RWP-RK domain-containing protein	2	20	18
		At1g76350	RWP-RK domain-containing protein	1
304	UAAGUAUUGUCGAAGAGCCUC	At2g17150	RWP-RK domain-containing protein	0.5	20	16
		At4g35270	RWP-RK domain-containing protein	1.5
305	UUUGAAACGUACAGUGUGCUC	At2g43500	RWP-RK domain-containing protein	2	47	26
		At3g59580	RWP-RK domain-containing protein	1
306	UGUCUACGGUAUUUAUCCCGA	At5g09410	CAMTA1; EICBP.B	2	28	22
		At5g64220	calmodulin-binding protein	3
307	UACCUUGCAUAGCACGCGCUU	At1g20910	ARID/BRIGHT DNA-binding domain-containing protein	2	28	23
		At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	2
		At2g17410	ARID/BRIGHT DNA-binding domain-containing protein	3
308	UAUUGCGAUUAAGACGCGCUC	At3g11200	AL2	1	19	18
		At5g05610	AL1	2
309	UGUUUUGCGAAUAUGUAGCGU	At4g14713	PPD1; TIFY4A	1.5	21	18
		At4g14720	PPD2; TIFY4B	1.5
310	UAGUAAUGUCGUUAUUGCCGG	At1g14440	ATHB31	2	20	18
		At2g02540	ATHB21; ZFHD4	1
311	UUCUUAAACGCGCCUUGACUA	At1g14685	BBR/BPC2	0	24	18
		At2g01930	BBR/BPC1	0
312	UGAAAGCUUAUCCUAUCACCA	At1g19350	BZR2; BES1	2	29	20
		At1g75080	BZR1	2
313	UUUUAUGUUGCUCACACGCGG	At5g08190	NF-YB12	1	26	23
		At5g23090	NF-YB13	2
314	UUAAGAGCGUGAAAAUGUCGC	At1g17590	NF-YA8	1	23	19
		At1g72830	HAP2C; NF-YA3	1.5
315	UUUACCCAUAACCAUUCGCGA	At1g08970	HAP5C; NF-YC9	2	17	16
		At1g54830	NF-YC3	2
316	UUAUAUGGCUUACGGCAGCUA	At3g05690	HAP2B; NF-YA2; UNE8	2	22	17
		At5g06510	NF-YA10	1
317	UAUGUAAUAUGGACCUGGCUG	At1g04990	zinc finger (CCCH-type) family protein	3	20	16
		At2g32930	ZFN2	1.5
318	UUAGAUAACGGCUGACGUCAA	At1g16060	ADAP	2.5	17	16
		At1g79700	ovule development protein, putative	1
319	UAGCUGCUCAAAAUGACGCAU	At2g39900	LIM domain-containing protein	2	23	20
		At3g55770	LIM domain-containing protein	2
320	UAGGACGUUGCCUAAUCGCGC	At1g53910	RAP2.12	2	24	23
		At3g14230	RAP2.2	2.5
321	UUGAGAUCUACAGACGUACUA	At1g17460	TRFL3	N.A.	21	20
		At1g72650	TRFL6	2
322	UACAGUAAGAGCAAAACGCCU	At1g76590	zinc-binding family protein	1	21	20
		At1g21000	zinc-binding family protein	2
323	UACUUUAGCACUAUGGAUCAA	At1g32700	zinc-binding family protein	N.A.	23	23
		At4g17900	zinc-binding family protein	2
324	UAACACGCAACCUAGUGUCGG	At1g28050	zinc finger (B-box type) family protein	2	34	28
		At2g33500	zinc finger (B-box type) family protein	2
325	UUUAUGGUUCGAUUGCUGCUA	At1g14920	GAI; RGA2	2	36	23
		At2g01570	RGA; RGA1	3
326	UGACUCGAAAACAACGUGCGU	At2g40140	ATSZF2; CZF1; SZF2; ZFAR1	2	33	22
		At3g55980	ATSZF1; SZF1	N.A.
327	UACAAUUAGCUAAGCAAGCGA	At1g11950	jumonji (jmjC) domain-containing protein	2	39	26
		At1g62310	jumonji (jmjC) domain-containing protein	2
328	UUUCUGCACAGUUGAACCCGC	At1g30810	jumonji (jmj) family protein	2.5	24	21
		At2g34880	ARREST 27; MEE27; PKDM7C	1.5
		At4g20400	JMJ14; PKDM7B	2.5
329	UUCAACAUGCCAGGCAAACAU	At3g48430	REF6	N.A.	23	17
		At5g04240	ELF6	3
		At5g46910	MQD22.4	0.5
330	UAGGUGCGUCAAUAGCGACUA	At2g32700	LUH	2.5	16	15
		At4g32551	LUG; RON2	1
331	UUGGAGAUAUUACCGCGACUA	At1g01530	AGL28	2.5	9	6
		At1g65360	AGL23	2.5
332	UUAAGAUAGCGAUUCGUGCGU	At5g38620	MADS-box transcription factor family protein	1.5	25	24
		At5g49420	MADS-box transcription factor family protein	2
		At5g49490	AGL83	2.5
333	UGCUUUGCUAUAUAGACGCGU	At1g46408	AGL97	N.A.	63	29
		At5g04640	AGL99	3
334	UUACUUCCUAGACCGGGUCCU	At5g26950	AGL93	N.A.	36	27
		At5g27070	AGL53	1
335	UAUACGCGAUCUUGUUGACGA	At3g30530	ATBZIP42; BZIP42	N.A.	6	4
		At5g38800	ATBZIP43; BZIP43	2.5
336	UUAGAUAGUGGAAGUAUCCAG	At1g13600	ATBZIP58; BZIP58	1
		At2g04038	ATBZIP48; BZIP48	N.A.
337	UGUAAGCCUGUUUCGUAGCAC	At2g41070	ATBZIP12; DPBF4; EEL	2.5	20	17
		At3g56850	AREB3; DPBF3	N.A.
338	UUAGGCAAGGUCAACGGGCCU	At1g49720	ABF1	2
		At3g19290	ABF4; AREB2	2.5
339	UACACGUUUAGGGUGAGACCU	At2g21230	Basic-leucine zipper (bZIP) transcription factor family protein	N.A.	22	22
		At4g38900	Basic-leucine zipper (bZIP) transcription factor family protein	3
340	UAAUUCUGAUUAGCCACGCAU	At2g16770	BZIP23	2	17	16
		At4g35040	BZIP19	N.A.
341	UAGCCUUAAGUUAUCACCCCG	At3g12250	TGA6; BZIP45	3	25	24
		At5g06960	TGA5; OBF5	2
342	UGAAUAUAGUCAAUCGUGCAG	At1g19180	JAZ1; TIFY10A	2	16	14
		At1g74950	JAZ2; TIFY10B	0
343	UUUUGAAGCGAACGUCUCCUA	At3g43440	JAZ11; TIFY3A	0.5	26	20
		At5g20900	JAZ12; TIFY3B	N.A.
344	UAGAAAAUGGCGUAGUGCCGA	At1g01260	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	2	64	27
		At2g46510	ATAIB; AIB	2.5
345	UAGUACGAGUAUCUGAACCUU	At2g36080	B3 DNA-binding domain transcription factor	1.5	20	20
		At5g06250	AP2/B3-like transcriptional factor family protein	2
346	UAAGAACUGUCAUAACGGCAG	At1g47870	E2F C; ATE2F2; ATE2FC	1	23	19
		At2g36010	ATE2FA; E2F; E2F3	1.5
347	UACCACAUCAUAAAUAGGCCG	At3g01330	DEL3; E2F-LIKE 2; E2FF; E2L2	3	15	15
		At5g14960	E2FD; E2L1; DEL2	2
348	UAACUCCUAAUUUCGCGGCGU	At3g48160	DEL1; E2FE; E2L3; E2F-LIKE3	N.A.	13	11
		At5g14960	DEL2; E2FD; E2L1	0.5
349	UAAAGCUGAGCACUUUCGCGG	At2g40950	BZIP17	1.5	20	17
		At3g10800	BZIP28	1.5
		At3g56660	BZIP49	3
350	UAAAACUAAUACUAGCGACCU	At2g40950	BZIP17	2	45	27
		At3g10800	BZIP28	0.5
351	UAACACUUCAGUGCACGUCCC	At2g40950	BZIP17	1.5	19	19
		At3g56660	BZIP49	N.A.
352	UAAAGUGACAUUCUGAGCCCC	At3g10800	BZIP28	2.5	22	18
		At3g56660	BZIP49	2.5
353	UUUUAUACAUGUUGUGAGCCG	At4g04890	PDF2	2.5	21	18
		At4g21750	ATML1	1.5
354	UACCCAUGACACAUGUGGCUC	At2g40140	ATSZF2; CZF1; SZF2; ZFAR1	2	18	18
		At2g41900	CCCH-type zinc finger protein with ARM repeat domain	3
		At3g55980	ATSZF1; SZF1	2
355	UUUGAAGGGUACAAACGACGC	At5g12850	CCCH-type zinc finger protein with ARM repeat domain	N.A.	21	15
		At5g58620	zinc finger (CCCH-type) family protein	2
356	UCUUGCGAUAAGUGGUGCCAG	At1g19350	BES1; BZR2	3	27	22
		At1g75080	BZR1	1.5
		At3g50750	BEH1	N.A.
		At4g36780	BEH2	0.5
357	UCUUUACACGGCUGGGUGCGG	At2g19810	ATOZF1; OZF1	N.A.	16	15
		At2g25900	ATCTH; ATTZF1	1
		At4g29190	Zinc finger C-x8-C-x5-C-x3-H type family protein	1
358	UAUCCUAGAUCAAGGUCGCUA	At1g03790	SOMNUS; SOM	2.5	22	22
		At5g44260	Zinc finger C-x8-C-x5-C-x3-H type family protein	1.5
359	UAAACCUCAGUUUUGUAGCGC	At1g66810	Zinc finger C-x8-C-x5-C-x3-H type family protein	0.5	17	15
		At1g68200	Zinc finger C-x8-C-x5-C-x3-H type family protein	1.5
360	UUGCAAAUAUAAGUUCGGCGC	At1g52150	CNA; ICU4	N.A.	13	13
		At4g32880	HB-8	2.5

Score: Probability of a transcript being a miRNA target, according to miRU (Plant microRNA Potential Target Finder) or to psRNATarget (from amiR-TPL325 to amiR-TPL360). The lower the score of a transcript, the higher its probability of being silenced by the amiRNA. The maximum score is 3.5, and depends on the number and position of mismatches (a maximum of 3) between the miRNA and its mRNA target. T2 lines confirmed: Lines confirmed to be resistant to hygromycin (15 µg/ml) among the first 30 T2 families obtained for each amiRNA in pMDC32. *amiRNA-producing construct obtained using the pBIN-JIT vector. N.A.: Not available.